Mercurial > repos > mzytnicki > s_mart

changeset 129:6b9afa2bdda3 draft

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Uploaded
author mzytnicki
date Fri, 26 Apr 2013 05:54:37 -0400
parents e49f0aa219f8
children 938a8ead56b8
files tool_conf.xml
diffstat 1 files changed, 48 insertions(+), 48 deletions(-) [+]
line wrap: on
line diff
--- a/tool_conf.xml	Fri Apr 26 05:03:11 2013 -0400
+++ b/tool_conf.xml	Fri Apr 26 05:54:37 2013 -0400
@@ -1,48 +1,48 @@
-	<section id="s_mart" name="S-MART" version="">
-		<label id="Comparison" text="Comparison Tools" version="">
-			<tool id="CompareOverlappingSmallQuery"/>
-			<tool id="CompareOverlappingSmallRef"/>
-			<tool id="CompareOverlapping"/>
-			<tool id="getDifference"/>
-			<tool id="ComputeCoverage"/>
-			<tool id="GetFlanking"/>
-			<tool id="GetDifferentialExpression"/>
-		<label id="Merge" text="Merge Tools" version="">
-			<tool id="MergingDataClusterize"/>
-			<tool id="mergeTranscriptLists"/>
-			<tool id="collapseReads"/>
-			<tool id="clusterizeBySlidingWindows"/>
-			<tool id="mergeSlidingWindowsClusters"/>
-		<label id="Visualization" text="Visualization Tools" version="">
-			<tool id="getDistribution"/>
-			<tool id="GetDistance"/>
-			<tool id="GetSizes"/>
-			<tool id="plotCoverage"/>
-			<tool id="getLetterDistribution1"/>
-			<tool id="plotTranscriptList"/>
-		<label id="Sequence" text="Sequence Tools" version="">
-			<tool id="CountReadGCPercent"/>
-		<label id="Modification" text="Modification Tools" version="">
-			<tool id="modifyGenomicCoordinates"/>
-			<tool id="modifySequenceList"/>
-			<tool id="trimSequences"/>
-		<label id="Selection" text="Selection Tools" version="">
-			<tool id="getExons"/>
-			<tool id="getIntrons"/>
-			<tool id="restrictFromSize"/>
-			<tool id="restrictTranscriptList"/>
-		<label id="Conversion" text="Conversion Tools" version="">
-			<tool id="ConvertTranscriptFile"/>
-			<tool id="coordinatesToSequence"/>
-			<tool id="mapperAnalyzer"/>
-		<label id="WIG" text="WIG Manipulation Tools" version="">
-			<tool id="getWigData"/>
-			<tool id="getWigDistance"/>
-			<tool id="getWigProfile"/>
-		<label id="GFF" text="GFF Manipulation Tools" version="">
-			<tool id="CleanTranscriptFile"/>
-			<tool id="changeTagName"/>
-			<tool id="changeGffFeatures"/>
-			<tool id="removeExonLines"/>
-			<tool id="SelectByTag"/>
-	</section>
+  <section id="s_mart" name="S-MART" version="">
+    <label id="Comparison" text="Comparison Tools" version="">
+      <tool id="s_martXML/CompareOverlappingSmallQuery.xml"/>
+      <tool id="s_martXML/CompareOverlappingSmallRef.xml"/>
+      <tool id="s_martXML/CompareOverlapping.xml"/>
+      <tool id="s_martXML/getDifference.xml"/>
+      <tool id="s_martXML/ComputeCoverage.xml"/>
+      <tool id="s_martXML/GetFlanking.xml"/>
+      <tool id="s_martXML/GetDifferentialExpression.xml"/>
+    <label id="Merge" text="Merge Tools" version="">
+      <tool id="s_martXML/MergingDataClusterize.xml"/>
+      <tool id="s_martXML/mergeTranscriptLists.xml"/>
+      <tool id="s_martXML/collapseReads.xml"/>
+      <tool id="s_martXML/clusterizeBySlidingWindows.xml"/>
+      <tool id="s_martXML/mergeSlidingWindowsClusters.xml"/>
+    <label id="Visualization" text="Visualization Tools" version="">
+      <tool id="s_martXML/getDistribution.xml"/>
+      <tool id="s_martXML/GetDistance.xml"/>
+      <tool id="s_martXML/GetSizes.xml"/>
+      <tool id="s_martXML/plotCoverage.xml"/>
+      <tool id="s_martXML/getLetterDistribution1.xml"/>
+      <tool id="s_martXML/plotTranscriptList.xml"/>
+    <label id="Sequence" text="Sequence Tools" version="">
+      <tool id="s_martXML/CountReadGCPercent.xml"/>
+    <label id="Modification" text="Modification Tools" version="">
+      <tool id="s_martXML/modifyGenomicCoordinates.xml"/>
+      <tool id="s_martXML/modifySequenceList.xml"/>
+      <tool id="s_martXML/trimSequences.xml"/>
+    <label id="Selection" text="Selection Tools" version="">
+      <tool id="s_martXML/getExons.xml"/>
+      <tool id="s_martXML/getIntrons.xml"/>
+      <tool id="s_martXML/restrictFromSize.xml"/>
+      <tool id="s_martXML/restrictTranscriptList.xml"/>
+    <label id="Conversion" text="Conversion Tools" version="">
+      <tool id="s_martXML/ConvertTranscriptFile.xml"/>
+      <tool id="s_martXML/coordinatesToSequence.xml"/>
+      <tool id="s_martXML/mapperAnalyzer.xml"/>
+    <label id="WIG" text="WIG Manipulation Tools" version="">
+      <tool id="s_martXML/getWigData.xml"/>
+      <tool id="s_martXML/getWigDistance.xml"/>
+      <tool id="s_martXML/getWigProfile.xml"/>
+    <label id="GFF" text="GFF Manipulation Tools" version="">
+      <tool id="s_martXML/CleanTranscriptFile.xml"/>
+      <tool id="s_martXML/changeTagName.xml"/>
+      <tool id="s_martXML/changeGffFeatures.xml"/>
+      <tool id="s_martXML/removeExonLines.xml"/>
+      <tool id="s_martXML/SelectByTag.xml"/>
+  </section>