Mercurial > repos > mzytnicki > s_mart
changeset 130:938a8ead56b8 draft
Uploaded
author | mzytnicki |
---|---|
date | Fri, 26 Apr 2013 11:37:49 -0400 |
parents | 6b9afa2bdda3 |
children | 505ffef8235a |
files | tool_conf.xml |
diffstat | 1 files changed, 46 insertions(+), 46 deletions(-) [+] |
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--- a/tool_conf.xml Fri Apr 26 05:54:37 2013 -0400 +++ b/tool_conf.xml Fri Apr 26 11:37:49 2013 -0400 @@ -1,48 +1,48 @@ <section id="s_mart" name="S-MART" version=""> - <label id="Comparison" text="Comparison Tools" version=""> - <tool id="s_martXML/CompareOverlappingSmallQuery.xml"/> - <tool id="s_martXML/CompareOverlappingSmallRef.xml"/> - <tool id="s_martXML/CompareOverlapping.xml"/> - <tool id="s_martXML/getDifference.xml"/> - <tool id="s_martXML/ComputeCoverage.xml"/> - <tool id="s_martXML/GetFlanking.xml"/> - <tool id="s_martXML/GetDifferentialExpression.xml"/> - <label id="Merge" text="Merge Tools" version=""> - <tool id="s_martXML/MergingDataClusterize.xml"/> - <tool id="s_martXML/mergeTranscriptLists.xml"/> - <tool id="s_martXML/collapseReads.xml"/> - <tool id="s_martXML/clusterizeBySlidingWindows.xml"/> - <tool id="s_martXML/mergeSlidingWindowsClusters.xml"/> - <label id="Visualization" text="Visualization Tools" version=""> - <tool id="s_martXML/getDistribution.xml"/> - <tool id="s_martXML/GetDistance.xml"/> - <tool id="s_martXML/GetSizes.xml"/> - <tool id="s_martXML/plotCoverage.xml"/> - <tool id="s_martXML/getLetterDistribution1.xml"/> - <tool id="s_martXML/plotTranscriptList.xml"/> - <label id="Sequence" text="Sequence Tools" version=""> - <tool id="s_martXML/CountReadGCPercent.xml"/> - <label id="Modification" text="Modification Tools" version=""> - <tool id="s_martXML/modifyGenomicCoordinates.xml"/> - <tool id="s_martXML/modifySequenceList.xml"/> - <tool id="s_martXML/trimSequences.xml"/> - <label id="Selection" text="Selection Tools" version=""> - <tool id="s_martXML/getExons.xml"/> - <tool id="s_martXML/getIntrons.xml"/> - <tool id="s_martXML/restrictFromSize.xml"/> - <tool id="s_martXML/restrictTranscriptList.xml"/> - <label id="Conversion" text="Conversion Tools" version=""> - <tool id="s_martXML/ConvertTranscriptFile.xml"/> - <tool id="s_martXML/coordinatesToSequence.xml"/> - <tool id="s_martXML/mapperAnalyzer.xml"/> - <label id="WIG" text="WIG Manipulation Tools" version=""> - <tool id="s_martXML/getWigData.xml"/> - <tool id="s_martXML/getWigDistance.xml"/> - <tool id="s_martXML/getWigProfile.xml"/> - <label id="GFF" text="GFF Manipulation Tools" version=""> - <tool id="s_martXML/CleanTranscriptFile.xml"/> - <tool id="s_martXML/changeTagName.xml"/> - <tool id="s_martXML/changeGffFeatures.xml"/> - <tool id="s_martXML/removeExonLines.xml"/> - <tool id="s_martXML/SelectByTag.xml"/> + <label id="Smart_Comparison" text="Comparison Tools" version=""> + <tool file="s_mart/CompareOverlappingSmallQuery.xml"/> + <tool file="s_mart/CompareOverlappingSmallRef.xml"/> + <tool file="s_mart/compareOverlapping.xml"/> + <tool file="s_mart/getDifference.xml"/> + <tool file="s_mart/computeCoverage.xml"/> + <tool file="s_mart/GetFlanking.xml"/> + <tool file="s_mart/GetDifferentialExpression.xml"/> + <label id="Smart_Merge" text="Merge Tools" version=""> + <tool file="s_mart/clusterize.xml"/> + <tool file="s_mart/mergeTranscriptLists.xml"/> + <tool file="s_mart/CollapseReads.xml"/> + <tool file="s_mart/clusterizeBySlidingWindows.xml"/> + <tool file="s_mart/mergeSlidingWindowsClusters.xml"/> + <label id="Smart_Visualization" text="Visualization Tools" version=""> + <tool file="s_mart/getDistribution.xml"/> + <tool file="s_mart/getDistance.xml"/> + <tool file="s_mart/getSizes.xml"/> + <tool file="s_mart/plotCoverage.xml"/> + <tool file="s_mart/WrappGetLetterDistribution1.xml"/> + <tool file="s_mart/plotTranscriptList.xml"/> + <label id="Smart_Sequence" text="Sequence Tools" version=""> + <tool file="s_mart/CountReadGCPercent.xml"/> + <label id="Smart_Modification" text="Modification Tools" version=""> + <tool file="s_mart/modifyGenomicCoordinates.xml"/> + <tool file="s_mart/modifySequenceList.xml"/> + <tool file="s_mart/trimSequences.xml"/> + <label id="Smart_Selection" text="Selection Tools" version=""> + <tool file="s_mart/getExons.xml"/> + <tool file="s_mart/getIntrons.xml"/> + <tool file="s_mart/restrictFromSize.xml"/> + <tool file="s_mart/restrictTranscriptList.xml"/> + <label id="Smart_Conversion" text="Conversion Tools" version=""> + <tool file="s_mart/ConvertTranscriptFile.xml"/> + <tool file="s_mart/coordinatesToSequence.xml"/> + <tool file="s_mart/mapperAnalyzer.xml"/> + <label id="Smart_WIG" text="WIG Manipulation Tools" version=""> + <tool file="s_mart/getWigData.xml"/> + <tool file="s_mart/getWigDistance.xml"/> + <tool file="s_mart/getWigProfile.xml"/> + <label id="Smart_GFF" text="GFF Manipulation Tools" version=""> + <tool file="s_mart/CleanTranscriptFile.xml"/> + <tool file="s_mart/changeTagName.xml"/> + <tool file="s_mart/changeGffFeatures.xml"/> + <tool file="s_mart/removeExonLines.xml"/> + <tool file="s_mart/SelectByTag.xml"/> </section>