Mercurial > repos > mzytnicki > s_mart

changeset 128:e49f0aa219f8 draft

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Uploaded
author mzytnicki
date Fri, 26 Apr 2013 05:03:11 -0400
parents 0b3bad5a8968
children 6b9afa2bdda3
files tool_conf.xml
diffstat 1 files changed, 48 insertions(+), 6 deletions(-) [+]
line wrap: on
line diff
--- a/tool_conf.xml	Wed Apr 24 09:38:17 2013 -0400
+++ b/tool_conf.xml	Fri Apr 26 05:03:11 2013 -0400
@@ -1,6 +1,48 @@
-<?xml version="1.0"?>
-<toolbox>
-    <section id="Visualization" name="Visualization Tools" version="">
-        <tool id="getDistribution"/>
-    </section>
-</toolbox>
+	<section id="s_mart" name="S-MART" version="">
+		<label id="Comparison" text="Comparison Tools" version="">
+			<tool id="CompareOverlappingSmallQuery"/>
+			<tool id="CompareOverlappingSmallRef"/>
+			<tool id="CompareOverlapping"/>
+			<tool id="getDifference"/>
+			<tool id="ComputeCoverage"/>
+			<tool id="GetFlanking"/>
+			<tool id="GetDifferentialExpression"/>
+		<label id="Merge" text="Merge Tools" version="">
+			<tool id="MergingDataClusterize"/>
+			<tool id="mergeTranscriptLists"/>
+			<tool id="collapseReads"/>
+			<tool id="clusterizeBySlidingWindows"/>
+			<tool id="mergeSlidingWindowsClusters"/>
+		<label id="Visualization" text="Visualization Tools" version="">
+			<tool id="getDistribution"/>
+			<tool id="GetDistance"/>
+			<tool id="GetSizes"/>
+			<tool id="plotCoverage"/>
+			<tool id="getLetterDistribution1"/>
+			<tool id="plotTranscriptList"/>
+		<label id="Sequence" text="Sequence Tools" version="">
+			<tool id="CountReadGCPercent"/>
+		<label id="Modification" text="Modification Tools" version="">
+			<tool id="modifyGenomicCoordinates"/>
+			<tool id="modifySequenceList"/>
+			<tool id="trimSequences"/>
+		<label id="Selection" text="Selection Tools" version="">
+			<tool id="getExons"/>
+			<tool id="getIntrons"/>
+			<tool id="restrictFromSize"/>
+			<tool id="restrictTranscriptList"/>
+		<label id="Conversion" text="Conversion Tools" version="">
+			<tool id="ConvertTranscriptFile"/>
+			<tool id="coordinatesToSequence"/>
+			<tool id="mapperAnalyzer"/>
+		<label id="WIG" text="WIG Manipulation Tools" version="">
+			<tool id="getWigData"/>
+			<tool id="getWigDistance"/>
+			<tool id="getWigProfile"/>
+		<label id="GFF" text="GFF Manipulation Tools" version="">
+			<tool id="CleanTranscriptFile"/>
+			<tool id="changeTagName"/>
+			<tool id="changeGffFeatures"/>
+			<tool id="removeExonLines"/>
+			<tool id="SelectByTag"/>
+	</section>