Mercurial > repos > mzeidler > virana2
changeset 5:4f6e349dfc17 draft
Uploaded
author | mzeidler |
---|---|
date | Tue, 24 Sep 2013 13:29:20 -0400 |
parents | 744255e6a25b |
children | 226228ac32a2 |
files | tool_dependencies.xml |
diffstat | 1 files changed, 2 insertions(+), 14 deletions(-) [+] |
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--- a/tool_dependencies.xml Tue Sep 24 12:36:40 2013 -0400 +++ b/tool_dependencies.xml Tue Sep 24 13:29:20 2013 -0400 @@ -86,20 +86,8 @@ <install version="1.0"> <actions> <action type="download_by_url">https://pypi.python.org/packages/source/H/HTSeq/HTSeq-0.5.4p3.tar.gz</action> - - <action type="make_directory">$INSTALL_DIR/lib/python</action> - <action type="make_directory">$INSTALL_DIR/lib64/python</action> <!-- Not sure why these must be made apriori, but install fails otherwise --> - <action type="shell_command"> - export PYTHONPATH=$PYTHONPATH:$INSTALL_DIR/lib/python:$INSTALL_DIR/lib64/python && - export PATH=$PATH:$PATH_NUMPY && - export PYTHONPATH=$PYTHONPATH:$PYTHONPATH_NUMPY && - python setup.py install --install-lib $INSTALL_DIR/lib/python --home $INSTALL_DIR --install-scripts $INSTALL_DIR/bin - </action> - <action type="set_environment"> - <environment_variable action="append_to" name="PYTHONPATH">$INSTALL_DIR/lib/python</environment_variable> - <environment_variable action="append_to" name="PYTHONPATH">$ENV[PYTHONPATH_NUMPY]</environment_variable> - <environment_variable action="prepend_to" name="PATH">$ENV[PATH_NUMPY]</environment_variable> - <environment_variable action="set_to" name="PYTHONPATH_HTSEQ">$INSTALL_DIR/lib/python</environment_variable> + <action type="shell_command"> + python setup.py install --user </action> </actions> </install>