# HG changeset patch
# User mzeidler
# Date 1380043760 14400
# Node ID 4f6e349dfc17b1ce94571f794508a5cde3f41630
# Parent  744255e6a25b89fc3faf94a28756b1bd76f58e1c
Uploaded

diff -r 744255e6a25b -r 4f6e349dfc17 tool_dependencies.xml
--- a/tool_dependencies.xml	Tue Sep 24 12:36:40 2013 -0400
+++ b/tool_dependencies.xml	Tue Sep 24 13:29:20 2013 -0400
@@ -86,20 +86,8 @@
         <install version="1.0">
             <actions>
                 <action type="download_by_url">https://pypi.python.org/packages/source/H/HTSeq/HTSeq-0.5.4p3.tar.gz</action>
-   
-                <action type="make_directory">$INSTALL_DIR/lib/python</action>
-                <action type="make_directory">$INSTALL_DIR/lib64/python</action> <!-- Not sure why these must be made apriori, but install fails otherwise -->
-                <action type="shell_command">
-                    export PYTHONPATH=$PYTHONPATH:$INSTALL_DIR/lib/python:$INSTALL_DIR/lib64/python &amp;&amp; 
-                    export PATH=$PATH:$PATH_NUMPY &amp;&amp; 
-                    export PYTHONPATH=$PYTHONPATH:$PYTHONPATH_NUMPY &amp;&amp; 
-                    python setup.py install --install-lib $INSTALL_DIR/lib/python --home $INSTALL_DIR --install-scripts $INSTALL_DIR/bin
-                </action>
-                <action type="set_environment">
-                    <environment_variable action="append_to" name="PYTHONPATH">$INSTALL_DIR/lib/python</environment_variable>
-                    <environment_variable action="append_to" name="PYTHONPATH">$ENV[PYTHONPATH_NUMPY]</environment_variable>
-                    <environment_variable action="prepend_to" name="PATH">$ENV[PATH_NUMPY]</environment_variable>
-                    <environment_variable action="set_to" name="PYTHONPATH_HTSEQ">$INSTALL_DIR/lib/python</environment_variable>
+                <action type="shell_command"> 
+                    python setup.py install --user
                 </action>
             </actions>
         </install>