Mercurial > repos > mzeidler > virana2
changeset 7:36a847fdcc49 draft
Uploaded
| author | mzeidler |
|---|---|
| date | Tue, 24 Sep 2013 14:18:42 -0400 |
| parents | 226228ac32a2 |
| children | 4cc84d6a7b21 |
| files | tool_dependencies.xml |
| diffstat | 1 files changed, 0 insertions(+), 35 deletions(-) [+] |
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--- a/tool_dependencies.xml Tue Sep 24 13:54:35 2013 -0400 +++ b/tool_dependencies.xml Tue Sep 24 14:18:42 2013 -0400 @@ -8,41 +8,6 @@ </actions> </install> </package> - <package name="numpy" version="1.7.1"> - <install version="1.0"> - <actions> - <action type="download_by_url">https://pypi.python.org/packages/source/n/numpy/numpy-1.7.1.tar.gz</action> - <action type="make_directory">$INSTALL_DIR/lib/python</action> - <action type="shell_command">export PYTHONPATH=$PYTHONPATH:$INSTALL_DIR/lib/python && python setup.py install --home $INSTALL_DIR --install-scripts $INSTALL_DIR/bin</action> - <action type="set_environment"> - <environment_variable name="PYTHONPATH" action="append_to">$INSTALL_DIR/lib/python</environment_variable> - <environment_variable name="PYTHONPATH_NUMPY" action="set_to">$INSTALL_DIR/lib/python</environment_variable> - <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR/bin</environment_variable> - </action> - </actions> - </install> - </package> -<package name="biopython" version="1.61"> - <install version="1.0"> - <actions> - <action type="download_by_url">https://pypi.python.org/packages/source/b/biopython/biopython-1.61.tar.gz</action> - <action type="shell_command"> - python setup.py install --user - </action> - </actions> - </install> - </package> - <package name="htseq" version="0.5.4"> - <install version="1.0"> - <actions> - <action type="download_by_url">https://pypi.python.org/packages/source/H/HTSeq/HTSeq-0.5.4p3.tar.gz</action> - <action type="shell_command"> - python setup.py install --user - </action> - </actions> - </install> - </package> - <package name="samtools" version="0.1.19"> <install> <actions>