# HG changeset patch
# User mzeidler
# Date 1380046722 14400
# Node ID 36a847fdcc493aae86da8c4af205b4e29f3b5f86
# Parent  226228ac32a2394f27965bf888ec8a4e4cfa81b3
Uploaded

diff -r 226228ac32a2 -r 36a847fdcc49 tool_dependencies.xml
--- a/tool_dependencies.xml	Tue Sep 24 13:54:35 2013 -0400
+++ b/tool_dependencies.xml	Tue Sep 24 14:18:42 2013 -0400
@@ -8,41 +8,6 @@
             </actions>
         </install>
     </package>
- <package name="numpy" version="1.7.1">
-        <install version="1.0">
-            <actions>
-                <action type="download_by_url">https://pypi.python.org/packages/source/n/numpy/numpy-1.7.1.tar.gz</action>
-                <action type="make_directory">$INSTALL_DIR/lib/python</action>
-                <action type="shell_command">export PYTHONPATH=$PYTHONPATH:$INSTALL_DIR/lib/python &amp;&amp; python setup.py install --home $INSTALL_DIR --install-scripts $INSTALL_DIR/bin</action>
-                <action type="set_environment">
-                    <environment_variable name="PYTHONPATH" action="append_to">$INSTALL_DIR/lib/python</environment_variable>
-                    <environment_variable name="PYTHONPATH_NUMPY" action="set_to">$INSTALL_DIR/lib/python</environment_variable>
-                    <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR/bin</environment_variable>
-                </action>
-            </actions>
-        </install>
-    </package>
-<package name="biopython" version="1.61">
-        <install version="1.0">
-            <actions>
-                <action type="download_by_url">https://pypi.python.org/packages/source/b/biopython/biopython-1.61.tar.gz</action>
-                <action type="shell_command">
-                    python setup.py install --user
-                </action>
-            </actions>
-        </install>
-    </package>
- <package name="htseq" version="0.5.4">
-        <install version="1.0">
-            <actions>
-                <action type="download_by_url">https://pypi.python.org/packages/source/H/HTSeq/HTSeq-0.5.4p3.tar.gz</action>
-                <action type="shell_command"> 
-                    python setup.py install --user
-                </action>
-            </actions>
-        </install>
-    </package>
-
     <package name="samtools" version="0.1.19">
         <install>
             <actions>