Mercurial > repos > morinlab > package_pyclone_dependencies_1_0

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author morinlab
date Sun, 04 Dec 2016 17:40:44 -0500
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<?xml version="1.0"?>
<tool_dependency>

	<package name="pyclone_dependencies" version="1.0">
		<install version="1.0">

			<actions_group>
					<actions os="linux" architecture="x86_64">
					<action type="download_by_url" md5sum="b2af3b9ff39c4a4a812f50cecbafcda6" target_filename="Miniconda2-4.1.11-Linux-x86_64.sh">
							https://repo.continuum.io/miniconda/Miniconda2-4.1.11-Linux-x86_64.sh
					</action>

					<action type="shell_command">
						bash Miniconda2-4.1.11-Linux-x86_64.sh -b -f -p $INSTALL_DIR
					</action>
				</actions>

				<actions os="darwin" architecture="x86_64">
					<action type="download_by_url" md5sum="b2af3b9ff39c4a4a812f50cecbafcda6" target_filename="Miniconda2-4.1.11-MacOSX-x86_64.sh">
						https://repo.continuum.io/miniconda/Miniconda2-4.1.11-MacOSX-x86_64.sh
					</action>

					<action type="shell_command">
						bash Miniconda2-4.1.11-MacOSX-x86_64.sh -b -f -p $INSTALL_DIR
					</action>
				</actions>

				<action type="shell_command">
					$INSTALL_DIR/bin/conda install --quiet --yes numpy scipy pyyaml matplotlib seaborn pandas
				</action>

				<action type="shell_command">
					$INSTALL_DIR/bin/conda install pydp -c aroth85
				</action>

				<action type="set_environment">
                        <environment_variable action="prepend_to" name="PYTHONPATH">$INSTALL_DIR</environment_variable>
                        <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR/bin</environment_variable>
                        <environment_variable action="set_to" name="ANACONDA_ROOT_DIR">$INSTALL_DIR</environment_variable>
                </action>

			</actions_group>

		</install>
	</package>

</tool_dependency>