comparison tool_dependencies.xml @ 0:76ea4bb20ded draft default tip

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author morinlab
date Sun, 04 Dec 2016 17:40:44 -0500
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1 <?xml version="1.0"?>
2 <tool_dependency>
3
4 <package name="pyclone_dependencies" version="1.0">
5 <install version="1.0">
6
7 <actions_group>
8 <actions os="linux" architecture="x86_64">
9 <action type="download_by_url" md5sum="b2af3b9ff39c4a4a812f50cecbafcda6" target_filename="Miniconda2-4.1.11-Linux-x86_64.sh">
10 https://repo.continuum.io/miniconda/Miniconda2-4.1.11-Linux-x86_64.sh
11 </action>
12
13 <action type="shell_command">
14 bash Miniconda2-4.1.11-Linux-x86_64.sh -b -f -p $INSTALL_DIR
15 </action>
16 </actions>
17
18 <actions os="darwin" architecture="x86_64">
19 <action type="download_by_url" md5sum="b2af3b9ff39c4a4a812f50cecbafcda6" target_filename="Miniconda2-4.1.11-MacOSX-x86_64.sh">
20 https://repo.continuum.io/miniconda/Miniconda2-4.1.11-MacOSX-x86_64.sh
21 </action>
22
23 <action type="shell_command">
24 bash Miniconda2-4.1.11-MacOSX-x86_64.sh -b -f -p $INSTALL_DIR
25 </action>
26 </actions>
27
28 <action type="shell_command">
29 $INSTALL_DIR/bin/conda install --quiet --yes numpy scipy pyyaml matplotlib seaborn pandas
30 </action>
31
32 <action type="shell_command">
33 $INSTALL_DIR/bin/conda install pydp -c aroth85
34 </action>
35
36 <action type="set_environment">
37 <environment_variable action="prepend_to" name="PYTHONPATH">$INSTALL_DIR</environment_variable>
38 <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR/bin</environment_variable>
39 <environment_variable action="set_to" name="ANACONDA_ROOT_DIR">$INSTALL_DIR</environment_variable>
40 </action>
41
42 </actions_group>
43
44 </install>
45 </package>
46
47 </tool_dependency>