Mercurial > repos > morinlab > package_pyclone_dependencies_1_0

changeset 0:76ea4bb20ded draft default tip

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author morinlab
date Sun, 04 Dec 2016 17:40:44 -0500
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children
files tool_dependencies.xml
diffstat 1 files changed, 47 insertions(+), 0 deletions(-) [+]
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/tool_dependencies.xml	Sun Dec 04 17:40:44 2016 -0500
@@ -0,0 +1,47 @@
+<?xml version="1.0"?>
+<tool_dependency>
+
+	<package name="pyclone_dependencies" version="1.0">
+		<install version="1.0">
+
+			<actions_group>
+					<actions os="linux" architecture="x86_64">
+					<action type="download_by_url" md5sum="b2af3b9ff39c4a4a812f50cecbafcda6" target_filename="Miniconda2-4.1.11-Linux-x86_64.sh">
+							https://repo.continuum.io/miniconda/Miniconda2-4.1.11-Linux-x86_64.sh
+					</action>
+
+					<action type="shell_command">
+						bash Miniconda2-4.1.11-Linux-x86_64.sh -b -f -p $INSTALL_DIR
+					</action>
+				</actions>
+
+				<actions os="darwin" architecture="x86_64">
+					<action type="download_by_url" md5sum="b2af3b9ff39c4a4a812f50cecbafcda6" target_filename="Miniconda2-4.1.11-MacOSX-x86_64.sh">
+						https://repo.continuum.io/miniconda/Miniconda2-4.1.11-MacOSX-x86_64.sh
+					</action>
+
+					<action type="shell_command">
+						bash Miniconda2-4.1.11-MacOSX-x86_64.sh -b -f -p $INSTALL_DIR
+					</action>
+				</actions>
+
+				<action type="shell_command">
+					$INSTALL_DIR/bin/conda install --quiet --yes numpy scipy pyyaml matplotlib seaborn pandas
+				</action>
+
+				<action type="shell_command">
+					$INSTALL_DIR/bin/conda install pydp -c aroth85
+				</action>
+
+				<action type="set_environment">
+                        <environment_variable action="prepend_to" name="PYTHONPATH">$INSTALL_DIR</environment_variable>
+                        <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR/bin</environment_variable>
+                        <environment_variable action="set_to" name="ANACONDA_ROOT_DIR">$INSTALL_DIR</environment_variable>
+                </action>
+
+			</actions_group>
+
+		</install>
+	</package>
+
+</tool_dependency>
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