annotate tool_dependencies.xml @ 0:76ea4bb20ded draft default tip

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author morinlab
date Sun, 04 Dec 2016 17:40:44 -0500
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1 <?xml version="1.0"?>
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2 <tool_dependency>
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4 <package name="pyclone_dependencies" version="1.0">
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5 <install version="1.0">
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7 <actions_group>
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8 <actions os="linux" architecture="x86_64">
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9 <action type="download_by_url" md5sum="b2af3b9ff39c4a4a812f50cecbafcda6" target_filename="Miniconda2-4.1.11-Linux-x86_64.sh">
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10 https://repo.continuum.io/miniconda/Miniconda2-4.1.11-Linux-x86_64.sh
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11 </action>
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12
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13 <action type="shell_command">
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14 bash Miniconda2-4.1.11-Linux-x86_64.sh -b -f -p $INSTALL_DIR
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15 </action>
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16 </actions>
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18 <actions os="darwin" architecture="x86_64">
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19 <action type="download_by_url" md5sum="b2af3b9ff39c4a4a812f50cecbafcda6" target_filename="Miniconda2-4.1.11-MacOSX-x86_64.sh">
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20 https://repo.continuum.io/miniconda/Miniconda2-4.1.11-MacOSX-x86_64.sh
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21 </action>
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23 <action type="shell_command">
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24 bash Miniconda2-4.1.11-MacOSX-x86_64.sh -b -f -p $INSTALL_DIR
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25 </action>
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26 </actions>
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28 <action type="shell_command">
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29 $INSTALL_DIR/bin/conda install --quiet --yes numpy scipy pyyaml matplotlib seaborn pandas
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30 </action>
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32 <action type="shell_command">
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33 $INSTALL_DIR/bin/conda install pydp -c aroth85
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34 </action>
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36 <action type="set_environment">
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37 <environment_variable action="prepend_to" name="PYTHONPATH">$INSTALL_DIR</environment_variable>
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38 <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR/bin</environment_variable>
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39 <environment_variable action="set_to" name="ANACONDA_ROOT_DIR">$INSTALL_DIR</environment_variable>
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40 </action>
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42 </actions_group>
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44 </install>
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45 </package>
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46
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47 </tool_dependency>