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0
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1 <?xml version="1.0"?>
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2 <tool_dependency>
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3 <package name="R" version="3.2.1">
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4 <repository changeset_revision="77d439695328" name="package_r_3_2_1" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" />
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5 </package>
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1
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6 <package name="cancer_genomics_functions" version="1.0">
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7 <install version="1.0">
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8 <actions>
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9 <action type="download_by_url">https://raw.githubusercontent.com/marcoalbuquerque-sfu/cancer_genomics_functions/master/functions.R</action>
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0
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10 <action type="setup_r_environment">
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11 <repository changeset_revision="77d439695328" name="package_r_3_2_1" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu">
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12 <package name="R" version="3.2.1" />
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13 </repository>
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1
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14 <package>https://cran.r-project.org/src/contrib/Archive/proto/proto_0.3-10.tar.gz</package>
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0
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15 <package>https://cran.r-project.org/src/contrib/findpython_1.0.1.tar.gz</package>
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16 <package>https://cran.r-project.org/src/contrib/getopt_1.20.0.tar.gz</package>
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17 <package>https://cran.r-project.org/src/contrib/rjson_0.2.15.tar.gz</package>
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1
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18 <package>https://cran.r-project.org/src/contrib/Archive/argparse/argparse_1.0.1.tar.gz</package>
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0
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19 </action>
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20 <action type="move_file">
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21 <source>functions.R</source>
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22 <destination>$INSTALL_DIR</destination>
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23 </action>
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1
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24 <action type="set_environment">
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25 <environment_variable action="set_to" name="CANCER_GENOMICS_FUNCTIONS_PATH">$INSTALL_DIR</environment_variable>
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26 </action>
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27 </actions>
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28 </install>
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29 </package>
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0
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30 </tool_dependency>
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