Mercurial > repos > morinlab > package_cancer_genomics_functions_1_0

comparison tool_dependencies.xml @ 1:1f875323d975 draft default tip

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author morinlab
date Fri, 27 Jan 2017 18:02:45 -0500
parents 54b4a501243f
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0:54b4a501243f 1:1f875323d975
1 <?xml version="1.0"?> 1 <?xml version="1.0"?>
2 <tool_dependency> 2 <tool_dependency>
3 <package name="R" version="3.2.1"> 3 <package name="R" version="3.2.1">
4 <repository changeset_revision="77d439695328" name="package_r_3_2_1" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" /> 4 <repository changeset_revision="77d439695328" name="package_r_3_2_1" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" />
5 </package> 5 </package>
6 <package name="cancer_genomics_functions" version="1.0"> 6 <package name="cancer_genomics_functions" version="1.0">
7 <install version="1.0"> 7 <install version="1.0">
8 <actions> 8 <actions>
9 <action type="download_by_url">https://raw.githubusercontent.com/marcoalbuquerque-sfu/cancer_genomics_functions/master/functions.R</action> 9 <action type="download_by_url">https://raw.githubusercontent.com/marcoalbuquerque-sfu/cancer_genomics_functions/master/functions.R</action>
10 <action type="setup_r_environment"> 10 <action type="setup_r_environment">
11 <repository changeset_revision="77d439695328" name="package_r_3_2_1" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu"> 11 <repository changeset_revision="77d439695328" name="package_r_3_2_1" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu">
12 <package name="R" version="3.2.1" /> 12 <package name="R" version="3.2.1" />
13 </repository> 13 </repository>
14 <package>https://cran.r-project.org/src/contrib/proto_0.3-10.tar.gz</package> 14 <package>https://cran.r-project.org/src/contrib/Archive/proto/proto_0.3-10.tar.gz</package>
15 <package>https://cran.r-project.org/src/contrib/findpython_1.0.1.tar.gz</package> 15 <package>https://cran.r-project.org/src/contrib/findpython_1.0.1.tar.gz</package>
16 <package>https://cran.r-project.org/src/contrib/getopt_1.20.0.tar.gz</package> 16 <package>https://cran.r-project.org/src/contrib/getopt_1.20.0.tar.gz</package>
17 <package>https://cran.r-project.org/src/contrib/rjson_0.2.15.tar.gz</package> 17 <package>https://cran.r-project.org/src/contrib/rjson_0.2.15.tar.gz</package>
18 <package>https://cran.r-project.org/src/contrib/argparse_1.0.1.tar.gz</package> 18 <package>https://cran.r-project.org/src/contrib/Archive/argparse/argparse_1.0.1.tar.gz</package>
19 </action> 19 </action>
20 <action type="move_file"> 20 <action type="move_file">
21 <source>functions.R</source> 21 <source>functions.R</source>
22 <destination>$INSTALL_DIR</destination> 22 <destination>$INSTALL_DIR</destination>
23 </action> 23 </action>
24 <action type="set_environment"> 24 <action type="set_environment">
25 <environment_variable action="set_to" name="CANCER_GENOMICS_FUNCTIONS_PATH">$INSTALL_DIR</environment_variable> 25 <environment_variable action="set_to" name="CANCER_GENOMICS_FUNCTIONS_PATH">$INSTALL_DIR</environment_variable>
26 </action> 26 </action>
27 </actions> 27 </actions>
28 </install> 28 </install>
29 </package> 29 </package>
30 </tool_dependency> 30 </tool_dependency>