Mercurial > repos > morinlab > package_cancer_genomics_functions_1_0

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author morinlab
date Mon, 12 Sep 2016 15:30:25 -0400
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children 1f875323d975
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<?xml version="1.0"?>
<tool_dependency>
  <package name="R" version="3.2.1">
    <repository changeset_revision="77d439695328" name="package_r_3_2_1" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" />
  </package>
	<package name="cancer_genomics_functions" version="1.0">
	  <install version="1.0">
		  <actions>
			  <action type="download_by_url">https://raw.githubusercontent.com/marcoalbuquerque-sfu/cancer_genomics_functions/master/functions.R</action>
        <action type="setup_r_environment">
          <repository changeset_revision="77d439695328" name="package_r_3_2_1" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu">
            <package name="R" version="3.2.1" />
          </repository>
          <package>https://cran.r-project.org/src/contrib/proto_0.3-10.tar.gz</package>
          <package>https://cran.r-project.org/src/contrib/findpython_1.0.1.tar.gz</package>
          <package>https://cran.r-project.org/src/contrib/getopt_1.20.0.tar.gz</package>
          <package>https://cran.r-project.org/src/contrib/rjson_0.2.15.tar.gz</package>
          <package>https://cran.r-project.org/src/contrib/argparse_1.0.1.tar.gz</package>
        </action>
        <action type="move_file">
          <source>functions.R</source>
          <destination>$INSTALL_DIR</destination>
        </action>
				<action type="set_environment">
				  <environment_variable action="set_to" name="CANCER_GENOMICS_FUNCTIONS_PATH">$INSTALL_DIR</environment_variable>
			  </action>
			</actions>
		</install>
	</package>
</tool_dependency>