Mercurial > repos > mingchen0919 > gtg_star_demo

annotate star_galaxy_outputs.sh @ 2:5c9d34a8061d draft default tip

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new test
author mingchen0919
date Wed, 20 Jun 2018 13:20:43 -0400
parents 44632fc0fc15
children
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
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1 # change directory to tool outputs directory
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2 cd ${REPORT_FILES_PATH}
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3
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4 # copy outputs from tool outputs directory to corresponding galaxy output path
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5 if [ -e "star.html" ]; then
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6 cp star.html ${REPORT}
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7 fi
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8
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9 if [ -e "index.html" ]; then
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10 cp index.html ${REPORT}
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11 fi
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12
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13 if [ -e "Aligned.out.sorted.bam" ]; then
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14 cp Aligned.out.sorted.bam ${X_S}
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15 fi