Mercurial > repos > mingchen0919 > gtg_star_demo

diff star_galaxy_outputs.sh @ 1:44632fc0fc15 draft

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update
author mingchen0919
date Wed, 20 Jun 2018 11:33:55 -0400
parents a1448d1f2ee4
children
line wrap: on
line diff
--- a/star_galaxy_outputs.sh	Wed Jun 20 10:24:45 2018 -0400
+++ b/star_galaxy_outputs.sh	Wed Jun 20 11:33:55 2018 -0400
@@ -2,8 +2,8 @@
 cd ${REPORT_FILES_PATH}
 
 # copy outputs from tool outputs directory to corresponding galaxy output path
-if [ -e "rmarkdown_report.html" ]; then
-  cp rmarkdown_report.html ${REPORT}
+if [ -e "star.html" ]; then
+  cp star.html ${REPORT}
 fi
 
 if [ -e "index.html" ]; then
@@ -11,5 +11,5 @@
 fi
 
 if [ -e "Aligned.out.sorted.bam" ]; then
-  cp index.html ${REPORT}
+  cp Aligned.out.sorted.bam ${X_S}
 fi
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