Mercurial > repos > mingchen0919 > gtg_star_demo
annotate star_galaxy_outputs.sh @ 0:a1448d1f2ee4 draft
planemo upload
| author | mingchen0919 |
|---|---|
| date | Wed, 20 Jun 2018 10:24:45 -0400 |
| parents | |
| children | 44632fc0fc15 |
| rev | line source |
|---|---|
| 0 | 1 # change directory to tool outputs directory |
| 2 cd ${REPORT_FILES_PATH} | |
| 3 | |
| 4 # copy outputs from tool outputs directory to corresponding galaxy output path | |
| 5 if [ -e "rmarkdown_report.html" ]; then | |
| 6 cp rmarkdown_report.html ${REPORT} | |
| 7 fi | |
| 8 | |
| 9 if [ -e "index.html" ]; then | |
| 10 cp index.html ${REPORT} | |
| 11 fi | |
| 12 | |
| 13 if [ -e "Aligned.out.sorted.bam" ]; then | |
| 14 cp index.html ${REPORT} | |
| 15 fi |