Mercurial > repos > mingchen0919 > aurora_htseq_site

annotate expose-outputs-to-galaxy-history.sh @ 6:a40d5db8687e draft

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planemo upload commit 7d411a114317ebd9dfc6a20a7f132e653ccad986-dirty
author mingchen0919
date Mon, 14 May 2018 11:00:01 -0400
parents b3e5f4753856
children
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
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b3e5f4753856 planemo upload commit 104ae24ee30761a0099eeb91362ed1e3e13aba4b-dirty
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1 # change directory to tool outputs directory
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2 cd ${REPORT_FILES_PATH}
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3
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4 # copy outputs from tool outputs directory to corresponding galaxy output path
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5 if [ -e "rmarkdown_report.html" ]; then
b3e5f4753856 planemo upload commit 104ae24ee30761a0099eeb91362ed1e3e13aba4b-dirty
mingchen0919
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6 cp rmarkdown_report.html ${REPORT}
b3e5f4753856 planemo upload commit 104ae24ee30761a0099eeb91362ed1e3e13aba4b-dirty
mingchen0919
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7 fi
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mingchen0919
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8
b3e5f4753856 planemo upload commit 104ae24ee30761a0099eeb91362ed1e3e13aba4b-dirty
mingchen0919
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9 if [ -e "index.html" ]; then
b3e5f4753856 planemo upload commit 104ae24ee30761a0099eeb91362ed1e3e13aba4b-dirty
mingchen0919
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10 cp index.html ${REPORT}
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mingchen0919
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11 fi
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12
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a40d5db8687e planemo upload commit 7d411a114317ebd9dfc6a20a7f132e653ccad986-dirty
mingchen0919
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13 if [ -e "count_data.csv" ];then
a40d5db8687e planemo upload commit 7d411a114317ebd9dfc6a20a7f132e653ccad986-dirty
mingchen0919
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14 cp count_data.csv ${X_c}
a40d5db8687e planemo upload commit 7d411a114317ebd9dfc6a20a7f132e653ccad986-dirty
mingchen0919
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15 fi