Mercurial > repos > mingchen0919 > aurora_htseq_site
changeset 6:a40d5db8687e draft
planemo upload commit 7d411a114317ebd9dfc6a20a7f132e653ccad986-dirty
| author | mingchen0919 |
|---|---|
| date | Mon, 14 May 2018 11:00:01 -0400 |
| parents | cf3fde5d0834 |
| children | 3dbbe1eba9de |
| files | 01_htseq_count_analysis.Rmd expose-outputs-to-galaxy-history.sh |
| diffstat | 2 files changed, 4 insertions(+), 2 deletions(-) [+] |
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--- a/01_htseq_count_analysis.Rmd Tue May 01 11:27:32 2018 -0400 +++ b/01_htseq_count_analysis.Rmd Mon May 14 11:00:01 2018 -0400 @@ -8,7 +8,7 @@ ## Job script ```{bash, echo=FALSE} -sh ${TOOL_INSTALL_DIR}/build-and-run-job-scripts.sh +sh ${TOOL_INSTALL_DIR}/build-and-run-job-scripts.sh > ${REPORT_FILES_PATH}/log.txt 2>&1 ``` ```{r echo=FALSE, comment='', results='asis'}
--- a/expose-outputs-to-galaxy-history.sh Tue May 01 11:27:32 2018 -0400 +++ b/expose-outputs-to-galaxy-history.sh Mon May 14 11:00:01 2018 -0400 @@ -10,4 +10,6 @@ cp index.html ${REPORT} fi -cp count_data.csv ${X_c} \ No newline at end of file +if [ -e "count_data.csv" ];then + cp count_data.csv ${X_c} +fi \ No newline at end of file