Mercurial > repos > melissacline > ucsc_xena_platform

changeset 3:98b498545a52

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Fixed xena_delete to delete the files from the Xena files directory as well as from the database
author melissacline
date Wed, 14 Jan 2015 16:35:12 -0800
parents 6eeb3ca663fb
children 1707e82d55bc c5b71ce5f7b1 8c7cb04577bd 8ac29f84644b 4a3c0e53d176
files xena_delete.py
diffstat 1 files changed, 6 insertions(+), 1 deletions(-) [+]
line wrap: on
line diff
--- a/xena_delete.py	Wed Jan 14 15:21:09 2015 -0800
+++ b/xena_delete.py	Wed Jan 14 16:35:12 2015 -0800
@@ -33,7 +33,6 @@
                                                            xenaFileDir,
                                                            args.datasetName,
                                                            xena.port())
-    print "Issuing command", xenaDeleteCmd
     try:
         subprocess.call(xenaDeleteCmd, shell=True)
     except:
@@ -45,6 +44,12 @@
         sys.exit(-1)
     else:
         fp2.write( "Dataset %s deleted\n" % args.datasetName)
+        dataPathname = xenaFileDir + "/" + args.datasetName
+        if os.path.exists(dataPathname):
+            os.unlink(dataPathname)
+        metadataPathname = dataPathname + ".json"
+        if os.path.exists(metadataPathname):
+            os.unlink(metadataPathname)
         fp2.close()
         sys.exit(0)