Cavm 0.3.1

Cancer Analytics Virtual Machine

cavm.binner

Utility for calculating bins for spatial ranges, useful as
b-tree indexed columns in a database.

Public variables and functions:

cavm.cgdata

Registration of cavm.reader methods for cgdata and plain tsv files.

Public variables and functions:

    cavm.conn-customizer

    Public variables and functions:

    cavm.conn-pool

    c3p0 connection pool utilities.

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    cavm.core

    xena server main.

    Public variables and functions:

    cavm.db

    Protocol for xena operations on a database.

    Public variables and functions:

    cavm.foo

    Public variables and functions:

    cavm.fs-utils

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    cavm.h2

    Xena H2 database backend

    cavm.h2-binary

    cavm.h2-unpack-rows

    Public variables and functions:

    cavm.hashable

    Hashable byte array type.

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    cavm.loader

    xena dataset loader entry point.

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    cavm.query.expression

    Minimal scheme interpreter.

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    cavm.query.functions

    A set of core functions for use with cavm.query.expression.

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    cavm.readers

    Interfaces for detecting and reading different types of files.

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    cavm.statement

    Utilities for sql prepared statements

    cavm.views.datasets

    Public variables and functions:

    cgdata.core

    Library for reading cgdata and related file formats.

    schemaspy

    Shim to let us run schemaSpy, with lein fetching the jar.

    Public variables and functions: