Mercurial > repos > melissacline > ucsc_xena_platform
changeset 11:8c7cb04577bd
Fixed the URL for the UCSC Xena datapages tool
| author | melissacline |
|---|---|
| date | Mon, 16 Mar 2015 19:03:38 -0700 |
| parents | 98b498545a52 |
| children | 80e588115eae |
| files | ucsc_xena_datapages.xml xena_utils.pyc |
| diffstat | 2 files changed, 6 insertions(+), 5 deletions(-) [+] |
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--- a/ucsc_xena_datapages.xml Wed Jan 14 16:35:12 2015 -0800 +++ b/ucsc_xena_datapages.xml Mon Mar 16 19:03:38 2015 -0700 @@ -4,13 +4,13 @@ the initial response. If value of 'URL_method' is 'post', any additional params coming back in the initial response ( in addition to 'URL' ) will be encoded and appended to URL and a post will be performed. --> -<tool name="Explore Data in Xena" id="ucsc_xenadatapages" tool_type="data_source"> +<tool name="Explore Data in Xena" id="ucsc_xena_datapages" tool_type="data_source"> <description>Browse the UCSC Xena Data Pages.</description> - <command interpreter="python">ucsc_xena_download.py $genomic $__app__.config.output_size_limit</command> - <inputs action="https://tcga1.kilokluster.ucsc.edu/~jzhu/proj/site/hgHeatmap-cavm/datapages" check_values="false" method="get"> - <display>Explore the data in Xena $GALAXY_URL</display> + <command interpreter="python">ucsc_xena_download.py $genomic $clinical $__app__.config.output_size_limit</command> + <inputs action="https://genome-cancer.ucsc.edu/proj/site/hgHeatmap-cavm/datapages" check_values="false" method="get"> + <display>go to UCSC Xena Browser $GALAXY_URL</display> <param name="GALAXY_URL" type="baseurl" value="/tool_runner" /> - <param name="tool_id" type="hidden" value="ucsc_xenadatapages" /> + <param name="tool_id" type="hidden" value="ucsc_xena_datapages" /> </inputs> <request_param_translation> <request_param galaxy_name="URL_method" remote_name="URL_method" missing="get" /> @@ -19,6 +19,7 @@ <uihints minwidth="800"/> <outputs> <data name="genomic" format="tabular" label="#echo $URL.rsplit('/',1)[1].rsplit('.',1)[0]+' genomic'" /> + <data name="clinical" format="tabular" label="#echo $URL.rsplit('/',1)[1].rsplit('.',1)[0]+' clinical'"/> </outputs> <options sanitize="False" refresh="True"/> </tool>