Mercurial > repos > melissacline > ucsc_xena_platform
changeset 4:1707e82d55bc
Tweaking the parameter labels for the xena import tool
| author | melissacline |
|---|---|
| date | Wed, 11 Feb 2015 16:45:54 -0800 |
| parents | 98b498545a52 |
| children | a1cad00d45ff |
| files | xena_import.xml |
| diffstat | 1 files changed, 7 insertions(+), 3 deletions(-) [+] |
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--- a/xena_import.xml Wed Jan 14 16:35:12 2015 -0800 +++ b/xena_import.xml Wed Feb 11 16:45:54 2015 -0800 @@ -32,8 +32,8 @@ <param format="data" type="data" name="xenaInputData" label="Data to import to Xena" optional="false"/> <conditional name="source"> <param type="select" name="metadataSource" label="Metadata entry"> + <option value="entry">Enter your own</option> <option value="json">Specify json metadata file</option> - <option value="entry">Enter your own</option> </param> <when value="json"> <param format="data" type="data" name="xenaMetadata" label="Metadata file" optional="false"/> @@ -42,8 +42,8 @@ <param format="str" type="text" name="cohort" label="Cohort" optional="false"/> <conditional name="format"> <param type="select" name="metadataType" label="File Format"> - <option value="genomicMatrix">Rows (Identifiers) by Columns (Samples)</option> - <option value="clinicalMatrix">Rows (Samples) by Columns (Identifiers)</option> + <option value="genomicMatrix">Rows (Identifiers) by Columns (Samples) (often genomic data)</option> + <option value="clinicalMatrix">Rows (Samples) by Columns (Identifiers) (often clinical data)</option> <option value="mutationVector">Mutation By Position</option> </param> <when value="genomicMatrix"> @@ -57,6 +57,7 @@ <option value="gene expression">gene expression</option> <option value="gene expression RNAseq">gene expression RNAseq</option> <option value="gene expression Array">gene expression Array</option> + <option value="mRNA expression">mRNA expression</option> <option value="somatic mutation (SNP and small INDELs)">somatic mutation (SNP and small INDELs)</option> <option value="somatic mutation (gene level)">somatic mutation (gene level)</option> <option value="protein expression RPPA">protein expression RPPA</option> @@ -72,6 +73,7 @@ <when value="gene expression"/> <when value="gene expression RNAseq"/> <when value="gene expression Array"/> + <when value="mRNA expression"/> <when value="somatic mutation (SNP and small INDELs)"/> <when value="somatic mutation (gene level)"/> <when value="protein expression RPPA"/> @@ -89,6 +91,7 @@ <option value="gene expression">gene expression</option> <option value="gene expression RNAseq">gene expression RNAseq</option> <option value="gene expression Array">gene expression Array</option> + <option value="mRNA expression">mRNA expression</option> <option value="somatic mutation (SNP and small INDELs)">somatic mutation (SNP and small INDELs)</option> <option value="somatic mutation (gene level)">somatic mutation (gene level)</option> <option value="protein expression RPPA">protein expression RPPA</option> @@ -104,6 +107,7 @@ <when value="gene expression"/> <when value="gene expression RNAseq"/> <when value="gene expression Array"/> + <when value="mRNA expression"/> <when value="somatic mutation (SNP and small INDELs)"/> <when value="somatic mutation (gene level)"/> <when value="protein expression RPPA"/>