Mercurial > repos > mahtabm > ensembl
view variant_effect_predictor/Bio/EnsEMBL/Pipeline/FASTA/Base.pm @ 3:d30fa12e4cc5 default tip
Merge heads 2:a5976b2dce6f and 1:09613ce8151e which were created as a result of a recently fixed bug.
author | devteam <devteam@galaxyproject.org> |
---|---|
date | Mon, 13 Jan 2014 10:38:30 -0500 |
parents | 1f6dce3d34e0 |
children |
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package Bio::EnsEMBL::Pipeline::FASTA::Base; use strict; use warnings; use base qw/Bio::EnsEMBL::Pipeline::Base/; use File::Spec; sub fasta_path { my ( $self, @extras ) = @_; return $self->get_dir('fasta', $self->param('species'), @extras); } sub old_path { my ($self, $species) = @_; my $base = $self->param('ftp_dir'); my $prod = $self->production_name($species); my $release = $self->param('previous_release'); my $dir = File::Spec->catdir($base, "release-$release", 'fasta', $prod, 'dna'); } 1;