annotate variant_effect_predictor/Bio/EnsEMBL/Pipeline/FASTA/Base.pm @ 3:d30fa12e4cc5 default tip

Merge heads 2:a5976b2dce6f and 1:09613ce8151e which were created as a result of a recently fixed bug.
author devteam <devteam@galaxyproject.org>
date Mon, 13 Jan 2014 10:38:30 -0500
parents 1f6dce3d34e0
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1 package Bio::EnsEMBL::Pipeline::FASTA::Base;
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2
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3 use strict;
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4 use warnings;
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5 use base qw/Bio::EnsEMBL::Pipeline::Base/;
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6
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7 use File::Spec;
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9 sub fasta_path {
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10 my ( $self, @extras ) = @_;
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11 return $self->get_dir('fasta', $self->param('species'), @extras);
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12 }
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14 sub old_path {
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15 my ($self, $species) = @_;
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16 my $base = $self->param('ftp_dir');
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17 my $prod = $self->production_name($species);
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18 my $release = $self->param('previous_release');
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19 my $dir = File::Spec->catdir($base, "release-$release", 'fasta', $prod, 'dna');
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20 }
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21
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22 1;