Mercurial > repos > mahtabm > ensembl
view variant_effect_predictor/Bio/EnsEMBL/Pipeline/FASTA/Base.pm @ 0:1f6dce3d34e0
Uploaded
author | mahtabm |
---|---|
date | Thu, 11 Apr 2013 02:01:53 -0400 |
parents | |
children |
line wrap: on
line source
package Bio::EnsEMBL::Pipeline::FASTA::Base; use strict; use warnings; use base qw/Bio::EnsEMBL::Pipeline::Base/; use File::Spec; sub fasta_path { my ( $self, @extras ) = @_; return $self->get_dir('fasta', $self->param('species'), @extras); } sub old_path { my ($self, $species) = @_; my $base = $self->param('ftp_dir'); my $prod = $self->production_name($species); my $release = $self->param('previous_release'); my $dir = File::Spec->catdir($base, "release-$release", 'fasta', $prod, 'dna'); } 1;