Mercurial > repos > lecorguille > trinity_stats

annotate trinity_stats.xml @ 0:5ea4163b1519 draft

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author lecorguille
date Tue, 15 Nov 2016 07:24:09 -0500
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children 8106cba8ba2b
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1 <tool id="trinity_stats" name="Trinity Statistics" version="2.2.0.0" >
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2 <description>Obtain basic stats for the number of genes and isoforms and contiguity of the assembly</description>
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3 <requirement type="package" version="2.2.0">trinity</requirement>
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4 <command>
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5 TrinityStats.pl '$trinity_assembly' > '$output'
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6 </command>
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7 <inputs>
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8 <param type="data" format="fasta" name="trinity_assembly" label="Trinity assembly" />
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9 </inputs>
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10 <outputs>
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11 <data format="tabular" name="output" label="Trinity_Assembly.statistics" />
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12 </outputs>
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13 </tool>