Mercurial > repos > lecorguille > trinity_stats

changeset 0:5ea4163b1519 draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
planemo upload
author lecorguille
date Tue, 15 Nov 2016 07:24:09 -0500
parents
children 8106cba8ba2b
files tool_dependencies.xml trinity_stats.xml
diffstat 2 files changed, 19 insertions(+), 0 deletions(-) [+]
line wrap: on
line diff
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/tool_dependencies.xml	Tue Nov 15 07:24:09 2016 -0500
@@ -0,0 +1,6 @@
+<?xml version="1.0"?>
+<tool_dependency>
+    <package name="trinity" version="2.2.0">
+        <repository changeset_revision="e7df326a23e6" name="package_trinity_2_2_0" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" />
+    </package>
+</tool_dependency>
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/trinity_stats.xml	Tue Nov 15 07:24:09 2016 -0500
@@ -0,0 +1,13 @@
+<tool id="trinity_stats" name="Trinity Statistics" version="2.2.0.0" >
+    <description>Obtain basic stats for the number of genes and isoforms and contiguity of the assembly</description>
+    <requirement type="package" version="2.2.0">trinity</requirement>
+    <command>
+        TrinityStats.pl '$trinity_assembly' > '$output'
+    </command>
+    <inputs>
+        <param type="data" format="fasta" name="trinity_assembly" label="Trinity assembly" />
+    </inputs>
+    <outputs>
+        <data format="tabular" name="output" label="Trinity_Assembly.statistics" />
+    </outputs>
+</tool>