Mercurial > repos > lecorguille > trinity_stats

diff trinity_stats.xml @ 0:5ea4163b1519 draft

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author lecorguille
date Tue, 15 Nov 2016 07:24:09 -0500
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children 8106cba8ba2b
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/trinity_stats.xml	Tue Nov 15 07:24:09 2016 -0500
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+<tool id="trinity_stats" name="Trinity Statistics" version="2.2.0.0" >
+    <description>Obtain basic stats for the number of genes and isoforms and contiguity of the assembly</description>
+    <requirement type="package" version="2.2.0">trinity</requirement>
+    <command>
+        TrinityStats.pl '$trinity_assembly' > '$output'
+    </command>
+    <inputs>
+        <param type="data" format="fasta" name="trinity_assembly" label="Trinity assembly" />
+    </inputs>
+    <outputs>
+        <data format="tabular" name="output" label="Trinity_Assembly.statistics" />
+    </outputs>
+</tool>