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0
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1 <?xml version="1.0"?>
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2 <tool_dependency>
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31
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3 <package name="ontologizer-jar" version="0.0.3">
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8
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4 <install version="1.0">
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5 <actions>
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28
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6 <action type="download_by_url" target_filename="ontologizer.jar">http://compbio.charite.de/contao/index.php/cmdlineOntologizer.html?file=tl_files/ontologizer/cmdline/Ontologizer.jar</action>
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7 <action type="move_file">
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8 <source>ontologizer.jar</source>
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9 <destination>$INSTALL_DIR/bin</destination>
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10 </action>
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21
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11 <action type="set_environment">
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29
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12 <environment_variable name="ONTOLOGIZER_JAR" action="set_to">$INSTALL_DIR/bin/ontologizer.jar</environment_variable>
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21
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13 </action>
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8
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14 </actions>
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15 </install>
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16 <readme>
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17 ontologizer requires java and curl to be installed.
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18 </readme>
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19 </package>
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6
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20 <package name="obo-scripts" version="1.0.12">
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0
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21 <install version="1.0">
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22 <actions>
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23 <action type="shell_command">git clone http://github.com/cmungall/obo-scripts</action>
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8
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24 <action type="move_directory_files">
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0
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25 <source_directory>./</source_directory>
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26 <destination_directory>$INSTALL_DIR</destination_directory>
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27 </action>
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8
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28 <action type="set_environment">
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0
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29 <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR</environment_variable>
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30 </action>
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31 </actions>
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32 </install>
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33 <readme>
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8
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34 obo_scripts require perl to be installed.
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35 </readme>
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36 </package>
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0
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37 </tool_dependency>
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