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changeset 9:185be058851e draft

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Uploaded
author jfb
date Wed, 21 Feb 2018 17:33:34 -0500
parents 2749290604f4
children 5a526c2ad031
files zippable Kinamine/Kinamine.xml
diffstat 1 files changed, 2 insertions(+), 1 deletions(-) [+]
line wrap: on
line diff
--- a/zippable Kinamine/Kinamine.xml	Wed Feb 21 16:58:03 2018 -0500
+++ b/zippable Kinamine/Kinamine.xml	Wed Feb 21 17:33:34 2018 -0500
@@ -6,9 +6,10 @@
 <!--
 	java -Djava.awt.headless=true  -cp KinaMine.jar KinaMine.KinaMine FDRreport.txt reference.fasta test-data 1
 	mkdir -p output &&
+	'$__tool_directory__/
 -->
     <command><![CDATA[
-        java -Djava.awt.headless=true -cp '$__tool_directory__/Kinamine.jar' KinaMine.KinaMine $FDRreport $reference output $fdr
+        java -Djava.awt.headless=true -cp Kinamine.jar KinaMine.KinaMine $FDRreport $reference output $fdr
     ]]></command>
     <inputs>
         <param format="txt" name="FDRreport" type="data" label="Distinct Peptide Report"/>