# HG changeset patch
# User jfb
# Date 1519252414 18000
# Node ID 185be058851e2bcd4951584a9f456e050e992048
# Parent  2749290604f4f8829699ebea321655b68c8e9cd9
Uploaded

diff -r 2749290604f4 -r 185be058851e zippable Kinamine/Kinamine.xml
--- a/zippable Kinamine/Kinamine.xml	Wed Feb 21 16:58:03 2018 -0500
+++ b/zippable Kinamine/Kinamine.xml	Wed Feb 21 17:33:34 2018 -0500
@@ -6,9 +6,10 @@
 <!--
 	java -Djava.awt.headless=true  -cp KinaMine.jar KinaMine.KinaMine FDRreport.txt reference.fasta test-data 1
 	mkdir -p output &&
+	'$__tool_directory__/
 -->
     <command><![CDATA[
-        java -Djava.awt.headless=true -cp '$__tool_directory__/Kinamine.jar' KinaMine.KinaMine $FDRreport $reference output $fdr
+        java -Djava.awt.headless=true -cp Kinamine.jar KinaMine.KinaMine $FDRreport $reference output $fdr
     ]]></command>
     <inputs>
         <param format="txt" name="FDRreport" type="data" label="Distinct Peptide Report"/>