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changeset 8:2749290604f4 draft

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attempting to fix the "unable to find main class" bug
author jfb
date Wed, 21 Feb 2018 16:58:03 -0500
parents 3a3953801f5e
children 185be058851e
files zippable Kinamine/Kinamine.xml
diffstat 1 files changed, 2 insertions(+), 2 deletions(-) [+]
line wrap: on
line diff
--- a/zippable Kinamine/Kinamine.xml	Wed Feb 21 16:12:13 2018 -0500
+++ b/zippable Kinamine/Kinamine.xml	Wed Feb 21 16:58:03 2018 -0500
@@ -4,10 +4,10 @@
        <requirement type="package" version="8.0.1440.1">Java</requirement>
     </requirements>
 <!--
-	java -Djava.awt.headless=true  -cp KinaMine.jar KinaMine.KinaMine FDRreport.txt reference.fasta $test KINASE
+	java -Djava.awt.headless=true  -cp KinaMine.jar KinaMine.KinaMine FDRreport.txt reference.fasta test-data 1
+	mkdir -p output &&
 -->
     <command><![CDATA[
-        mkdir -p output &&
         java -Djava.awt.headless=true -cp '$__tool_directory__/Kinamine.jar' KinaMine.KinaMine $FDRreport $reference output $fdr
     ]]></command>
     <inputs>