annotate Galaxy-Workflow-Region_Motif_Count_Comparison_Test_Motifs.ga @ 30:da0bc6dead0d draft

Restore deleted source files
author jeremyjliu
date Mon, 05 Jan 2015 22:28:37 -0500
parents c78ebf00379d
children
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29
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1 {
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2 "a_galaxy_workflow": "true",
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3 "annotation": "{\n \"refinery_type\": \"analysis\",\n \"refinery_relationships\": [\n {\n \"category\": \"1-1\",\n \"set1\": \"Region 1\",\n \"set2\": \"Region 2\"\n }\n ]\n}",
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4 "format-version": "0.1",
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5 "name": "Region Motif Count Comparison Combined Motifs",
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6 "steps": {
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7 "0": {
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8 "annotation": "",
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9 "id": 0,
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10 "input_connections": {},
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11 "inputs": [
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12 {
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13 "description": "",
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14 "name": "Region 1"
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15 }
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16 ],
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17 "name": "Input dataset",
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18 "outputs": [],
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19 "position": {
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23 "tool_errors": null,
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24 "tool_id": null,
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25 "tool_state": "{\"name\": \"Region 1\"}",
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26 "tool_version": null,
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27 "type": "data_input",
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28 "user_outputs": []
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29 },
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30 "1": {
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31 "annotation": "",
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32 "id": 1,
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33 "input_connections": {},
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34 "inputs": [
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35 {
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36 "description": "",
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37 "name": "Region 2"
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38 }
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39 ],
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40 "name": "Input dataset",
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41 "outputs": [],
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47 "tool_id": null,
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48 "tool_state": "{\"name\": \"Region 2\"}",
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49 "tool_version": null,
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50 "type": "data_input",
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51 "user_outputs": []
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52 },
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53 "2": {
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54 "annotation": "{\n \"out_tab\": {\n \"name\": \"motifs_count_region_1\",\n \"description\": \"Motif counts in region 1.\",\n \"type\": \"tabular\"\n }\n}",
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55 "id": 2,
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56 "input_connections": {
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58 "id": 0,
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59 "output_name": "output"
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60 }
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61 },
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62 "inputs": [],
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63 "name": "Region Motif Intersect",
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64 "outputs": [
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65 {
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66 "name": "out_tab",
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67 "type": "tabular"
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68 }
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69 ],
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70 "position": {
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73 },
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74 "post_job_actions": {},
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75 "tool_errors": null,
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76 "tool_id": "region_motif_intersect",
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77 "tool_state": "{\"__page__\": 0, \"db_type\": \"\\\"t\\\"\", \"in_bed\": \"null\", \"__rerun_remap_job_id__\": null}",
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78 "tool_version": "1.0.0",
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79 "type": "tool",
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80 "user_outputs": []
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81 },
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82 "3": {
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83 "annotation": "{\n \"out_tab\": {\n \"name\": \"motifs_count_region_2\",\n \"description\": \"Motif counts in region 2.\",\n \"type\": \"tabular\"\n }\n}",
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84 "id": 3,
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85 "input_connections": {
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86 "in_bed": {
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87 "id": 1,
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88 "output_name": "output"
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89 }
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90 },
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91 "inputs": [],
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92 "name": "Region Motif Intersect",
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93 "outputs": [
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94 {
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95 "name": "out_tab",
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96 "type": "tabular"
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97 }
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98 ],
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105 "tool_id": "region_motif_intersect",
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107 "tool_version": "1.0.0",
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108 "type": "tool",
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109 "user_outputs": []
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110 },
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111 "4": {
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112 "annotation": "{\n \"out_enriched\": {\n \"name\": \"motifs_enriched\",\n \"description\": \"Motifs enriched in regions 1 versus regions 2.\",\n \"type\": \"tabular\"\n },\n \"out_depleted\": {\n \"name\": \"motifs_depleted\",\n \"description\": \"Motifs depleted in regions 1 versus regions 2.\",\n \"type\": \"tabular\"\n },\n \"out_plots\": {\n \"name\": \"motif_counts_plots\",\n \"description\": \"Summary plots for motifs in regions 1 versus regions 2.\",\n \"type\": \"png\"\n }\n}",
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113 "id": 4,
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114 "input_connections": {
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115 "in_tab_1": {
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116 "id": 2,
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117 "output_name": "out_tab"
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118 },
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119 "in_tab_2": {
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120 "id": 3,
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121 "output_name": "out_tab"
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122 }
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123 },
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124 "inputs": [],
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125 "name": "Region Motif Count Compare",
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126 "outputs": [
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127 {
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128 "name": "out_enriched",
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129 "type": "tabular"
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130 },
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131 {
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132 "name": "out_depleted",
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133 "type": "tabular"
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134 },
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135 {
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136 "name": "out_plots",
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137 "type": "png"
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138 }
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139 ],
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150 "user_outputs": []
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151 }
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152 }
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153 }