Mercurial > repos > jeremyjliu > region_motif_enrichment
diff Galaxy-Workflow-Region_Motif_Count_Comparison_Test_Motifs.ga @ 29:c78ebf00379d draft
Add Refinery workflows
author | jeremyjliu |
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date | Mon, 05 Jan 2015 22:22:08 -0500 |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/Galaxy-Workflow-Region_Motif_Count_Comparison_Test_Motifs.ga Mon Jan 05 22:22:08 2015 -0500 @@ -0,0 +1,153 @@ +{ + "a_galaxy_workflow": "true", + "annotation": "{\n \"refinery_type\": \"analysis\",\n \"refinery_relationships\": [\n {\n \"category\": \"1-1\",\n \"set1\": \"Region 1\",\n \"set2\": \"Region 2\"\n }\n ]\n}", + "format-version": "0.1", + "name": "Region Motif Count Comparison Combined Motifs", + "steps": { + "0": { + "annotation": "", + "id": 0, + "input_connections": {}, + "inputs": [ + { + "description": "", + "name": "Region 1" + } + ], + "name": "Input dataset", + "outputs": [], + "position": { + "left": 206.95139360427856, + "top": 225.94445848464966 + }, + "tool_errors": null, + "tool_id": null, + "tool_state": "{\"name\": \"Region 1\"}", + "tool_version": null, + "type": "data_input", + "user_outputs": [] + }, + "1": { + "annotation": "", + "id": 1, + "input_connections": {}, + "inputs": [ + { + "description": "", + "name": "Region 2" + } + ], + "name": "Input dataset", + "outputs": [], + "position": { + "left": 205.94445085525513, + "top": 359.95488023757935 + }, + "tool_errors": null, + "tool_id": null, + "tool_state": "{\"name\": \"Region 2\"}", + "tool_version": null, + "type": "data_input", + "user_outputs": [] + }, + "2": { + "annotation": "{\n \"out_tab\": {\n \"name\": \"motifs_count_region_1\",\n \"description\": \"Motif counts in region 1.\",\n \"type\": \"tabular\"\n }\n}", + "id": 2, + "input_connections": { + "in_bed": { + "id": 0, + "output_name": "output" + } + }, + "inputs": [], + "name": "Region Motif Intersect", + "outputs": [ + { + "name": "out_tab", + "type": "tabular" + } + ], + "position": { + "left": 403.94792222976685, + "top": 206.9514012336731 + }, + "post_job_actions": {}, + "tool_errors": null, + "tool_id": "region_motif_intersect", + "tool_state": "{\"__page__\": 0, \"db_type\": \"\\\"t\\\"\", \"in_bed\": \"null\", \"__rerun_remap_job_id__\": null}", + "tool_version": "1.0.0", + "type": "tool", + "user_outputs": [] + }, + "3": { + "annotation": "{\n \"out_tab\": {\n \"name\": \"motifs_count_region_2\",\n \"description\": \"Motif counts in region 2.\",\n \"type\": \"tabular\"\n }\n}", + "id": 3, + "input_connections": { + "in_bed": { + "id": 1, + "output_name": "output" + } + }, + "inputs": [], + "name": "Region Motif Intersect", + "outputs": [ + { + "name": "out_tab", + "type": "tabular" + } + ], + "position": { + "left": 423.94792222976685, + "top": 351.9514012336731 + }, + "post_job_actions": {}, + "tool_errors": null, + "tool_id": "region_motif_intersect", + "tool_state": "{\"__page__\": 0, \"db_type\": \"\\\"t\\\"\", \"in_bed\": \"null\", \"__rerun_remap_job_id__\": null}", + "tool_version": "1.0.0", + "type": "tool", + "user_outputs": [] + }, + "4": { + "annotation": "{\n \"out_enriched\": {\n \"name\": \"motifs_enriched\",\n \"description\": \"Motifs enriched in regions 1 versus regions 2.\",\n \"type\": \"tabular\"\n },\n \"out_depleted\": {\n \"name\": \"motifs_depleted\",\n \"description\": \"Motifs depleted in regions 1 versus regions 2.\",\n \"type\": \"tabular\"\n },\n \"out_plots\": {\n \"name\": \"motif_counts_plots\",\n \"description\": \"Summary plots for motifs in regions 1 versus regions 2.\",\n \"type\": \"png\"\n }\n}", + "id": 4, + "input_connections": { + "in_tab_1": { + "id": 2, + "output_name": "out_tab" + }, + "in_tab_2": { + "id": 3, + "output_name": "out_tab" + } + }, + "inputs": [], + "name": "Region Motif Count Compare", + "outputs": [ + { + "name": "out_enriched", + "type": "tabular" + }, + { + "name": "out_depleted", + "type": "tabular" + }, + { + "name": "out_plots", + "type": "png" + } + ], + "position": { + "left": 644.4549102783203, + "top": 257.9444580078125 + }, + "post_job_actions": {}, + "tool_errors": null, + "tool_id": "region_motif_compare", + "tool_state": "{\"in_tab_1\": \"null\", \"db_type\": \"\\\"t\\\"\", \"__rerun_remap_job_id__\": null, \"in_tab_2\": \"null\", \"__page__\": 0}", + "tool_version": "1.0.0", + "type": "tool", + "user_outputs": [] + } + } +} \ No newline at end of file