comparison Galaxy-Workflow-Region_Motif_Count_Comparison_Test_Motifs.ga @ 29:c78ebf00379d draft

Add Refinery workflows
author jeremyjliu
date Mon, 05 Jan 2015 22:22:08 -0500
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28:c8783602cbf0 29:c78ebf00379d
1 {
2 "a_galaxy_workflow": "true",
3 "annotation": "{\n \"refinery_type\": \"analysis\",\n \"refinery_relationships\": [\n {\n \"category\": \"1-1\",\n \"set1\": \"Region 1\",\n \"set2\": \"Region 2\"\n }\n ]\n}",
4 "format-version": "0.1",
5 "name": "Region Motif Count Comparison Combined Motifs",
6 "steps": {
7 "0": {
8 "annotation": "",
9 "id": 0,
10 "input_connections": {},
11 "inputs": [
12 {
13 "description": "",
14 "name": "Region 1"
15 }
16 ],
17 "name": "Input dataset",
18 "outputs": [],
19 "position": {
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21 "top": 225.94445848464966
22 },
23 "tool_errors": null,
24 "tool_id": null,
25 "tool_state": "{\"name\": \"Region 1\"}",
26 "tool_version": null,
27 "type": "data_input",
28 "user_outputs": []
29 },
30 "1": {
31 "annotation": "",
32 "id": 1,
33 "input_connections": {},
34 "inputs": [
35 {
36 "description": "",
37 "name": "Region 2"
38 }
39 ],
40 "name": "Input dataset",
41 "outputs": [],
42 "position": {
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44 "top": 359.95488023757935
45 },
46 "tool_errors": null,
47 "tool_id": null,
48 "tool_state": "{\"name\": \"Region 2\"}",
49 "tool_version": null,
50 "type": "data_input",
51 "user_outputs": []
52 },
53 "2": {
54 "annotation": "{\n \"out_tab\": {\n \"name\": \"motifs_count_region_1\",\n \"description\": \"Motif counts in region 1.\",\n \"type\": \"tabular\"\n }\n}",
55 "id": 2,
56 "input_connections": {
57 "in_bed": {
58 "id": 0,
59 "output_name": "output"
60 }
61 },
62 "inputs": [],
63 "name": "Region Motif Intersect",
64 "outputs": [
65 {
66 "name": "out_tab",
67 "type": "tabular"
68 }
69 ],
70 "position": {
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72 "top": 206.9514012336731
73 },
74 "post_job_actions": {},
75 "tool_errors": null,
76 "tool_id": "region_motif_intersect",
77 "tool_state": "{\"__page__\": 0, \"db_type\": \"\\\"t\\\"\", \"in_bed\": \"null\", \"__rerun_remap_job_id__\": null}",
78 "tool_version": "1.0.0",
79 "type": "tool",
80 "user_outputs": []
81 },
82 "3": {
83 "annotation": "{\n \"out_tab\": {\n \"name\": \"motifs_count_region_2\",\n \"description\": \"Motif counts in region 2.\",\n \"type\": \"tabular\"\n }\n}",
84 "id": 3,
85 "input_connections": {
86 "in_bed": {
87 "id": 1,
88 "output_name": "output"
89 }
90 },
91 "inputs": [],
92 "name": "Region Motif Intersect",
93 "outputs": [
94 {
95 "name": "out_tab",
96 "type": "tabular"
97 }
98 ],
99 "position": {
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101 "top": 351.9514012336731
102 },
103 "post_job_actions": {},
104 "tool_errors": null,
105 "tool_id": "region_motif_intersect",
106 "tool_state": "{\"__page__\": 0, \"db_type\": \"\\\"t\\\"\", \"in_bed\": \"null\", \"__rerun_remap_job_id__\": null}",
107 "tool_version": "1.0.0",
108 "type": "tool",
109 "user_outputs": []
110 },
111 "4": {
112 "annotation": "{\n \"out_enriched\": {\n \"name\": \"motifs_enriched\",\n \"description\": \"Motifs enriched in regions 1 versus regions 2.\",\n \"type\": \"tabular\"\n },\n \"out_depleted\": {\n \"name\": \"motifs_depleted\",\n \"description\": \"Motifs depleted in regions 1 versus regions 2.\",\n \"type\": \"tabular\"\n },\n \"out_plots\": {\n \"name\": \"motif_counts_plots\",\n \"description\": \"Summary plots for motifs in regions 1 versus regions 2.\",\n \"type\": \"png\"\n }\n}",
113 "id": 4,
114 "input_connections": {
115 "in_tab_1": {
116 "id": 2,
117 "output_name": "out_tab"
118 },
119 "in_tab_2": {
120 "id": 3,
121 "output_name": "out_tab"
122 }
123 },
124 "inputs": [],
125 "name": "Region Motif Count Compare",
126 "outputs": [
127 {
128 "name": "out_enriched",
129 "type": "tabular"
130 },
131 {
132 "name": "out_depleted",
133 "type": "tabular"
134 },
135 {
136 "name": "out_plots",
137 "type": "png"
138 }
139 ],
140 "position": {
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144 "post_job_actions": {},
145 "tool_errors": null,
146 "tool_id": "region_motif_compare",
147 "tool_state": "{\"in_tab_1\": \"null\", \"db_type\": \"\\\"t\\\"\", \"__rerun_remap_job_id__\": null, \"in_tab_2\": \"null\", \"__page__\": 0}",
148 "tool_version": "1.0.0",
149 "type": "tool",
150 "user_outputs": []
151 }
152 }
153 }