view Galaxy-Workflow-Region_Motif_Count_Comparison_Test_Motifs.ga @ 29:c78ebf00379d draft

Add Refinery workflows

{
    "a_galaxy_workflow": "true", 
    "annotation": "{\n        \"refinery_type\": \"analysis\",\n        \"refinery_relationships\": [\n                {\n                        \"category\": \"1-1\",\n                        \"set1\": \"Region 1\",\n                        \"set2\": \"Region 2\"\n                }\n        ]\n}", 
    "format-version": "0.1", 
    "name": "Region Motif Count Comparison Combined Motifs", 
    "steps": {
        "0": {
            "annotation": "", 
            "id": 0, 
            "input_connections": {}, 
            "inputs": [
                {
                    "description": "", 
                    "name": "Region 1"
                }
            ], 
            "name": "Input dataset", 
            "outputs": [], 
            "position": {
                "left": 206.95139360427856, 
                "top": 225.94445848464966
            }, 
            "tool_errors": null, 
            "tool_id": null, 
            "tool_state": "{\"name\": \"Region 1\"}", 
            "tool_version": null, 
            "type": "data_input", 
            "user_outputs": []
        }, 
        "1": {
            "annotation": "", 
            "id": 1, 
            "input_connections": {}, 
            "inputs": [
                {
                    "description": "", 
                    "name": "Region 2"
                }
            ], 
            "name": "Input dataset", 
            "outputs": [], 
            "position": {
                "left": 205.94445085525513, 
                "top": 359.95488023757935
            }, 
            "tool_errors": null, 
            "tool_id": null, 
            "tool_state": "{\"name\": \"Region 2\"}", 
            "tool_version": null, 
            "type": "data_input", 
            "user_outputs": []
        }, 
        "2": {
            "annotation": "{\n        \"out_tab\": {\n                \"name\": \"motifs_count_region_1\",\n                \"description\": \"Motif counts in region 1.\",\n                \"type\": \"tabular\"\n        }\n}", 
            "id": 2, 
            "input_connections": {
                "in_bed": {
                    "id": 0, 
                    "output_name": "output"
                }
            }, 
            "inputs": [], 
            "name": "Region Motif Intersect", 
            "outputs": [
                {
                    "name": "out_tab", 
                    "type": "tabular"
                }
            ], 
            "position": {
                "left": 403.94792222976685, 
                "top": 206.9514012336731
            }, 
            "post_job_actions": {}, 
            "tool_errors": null, 
            "tool_id": "region_motif_intersect", 
            "tool_state": "{\"__page__\": 0, \"db_type\": \"\\\"t\\\"\", \"in_bed\": \"null\", \"__rerun_remap_job_id__\": null}", 
            "tool_version": "1.0.0", 
            "type": "tool", 
            "user_outputs": []
        }, 
        "3": {
            "annotation": "{\n        \"out_tab\": {\n                \"name\": \"motifs_count_region_2\",\n                \"description\": \"Motif counts in region 2.\",\n                \"type\": \"tabular\"\n        }\n}", 
            "id": 3, 
            "input_connections": {
                "in_bed": {
                    "id": 1, 
                    "output_name": "output"
                }
            }, 
            "inputs": [], 
            "name": "Region Motif Intersect", 
            "outputs": [
                {
                    "name": "out_tab", 
                    "type": "tabular"
                }
            ], 
            "position": {
                "left": 423.94792222976685, 
                "top": 351.9514012336731
            }, 
            "post_job_actions": {}, 
            "tool_errors": null, 
            "tool_id": "region_motif_intersect", 
            "tool_state": "{\"__page__\": 0, \"db_type\": \"\\\"t\\\"\", \"in_bed\": \"null\", \"__rerun_remap_job_id__\": null}", 
            "tool_version": "1.0.0", 
            "type": "tool", 
            "user_outputs": []
        }, 
        "4": {
            "annotation": "{\n        \"out_enriched\": {\n                \"name\": \"motifs_enriched\",\n                \"description\": \"Motifs enriched in regions 1 versus regions 2.\",\n                \"type\": \"tabular\"\n        },\n        \"out_depleted\": {\n                \"name\": \"motifs_depleted\",\n                \"description\": \"Motifs depleted in regions 1 versus regions 2.\",\n                \"type\": \"tabular\"\n        },\n        \"out_plots\": {\n                \"name\": \"motif_counts_plots\",\n                \"description\": \"Summary plots for motifs in regions 1 versus regions 2.\",\n                \"type\": \"png\"\n        }\n}", 
            "id": 4, 
            "input_connections": {
                "in_tab_1": {
                    "id": 2, 
                    "output_name": "out_tab"
                }, 
                "in_tab_2": {
                    "id": 3, 
                    "output_name": "out_tab"
                }
            }, 
            "inputs": [], 
            "name": "Region Motif Count Compare", 
            "outputs": [
                {
                    "name": "out_enriched", 
                    "type": "tabular"
                }, 
                {
                    "name": "out_depleted", 
                    "type": "tabular"
                }, 
                {
                    "name": "out_plots", 
                    "type": "png"
                }
            ], 
            "position": {
                "left": 644.4549102783203, 
                "top": 257.9444580078125
            }, 
            "post_job_actions": {}, 
            "tool_errors": null, 
            "tool_id": "region_motif_compare", 
            "tool_state": "{\"in_tab_1\": \"null\", \"db_type\": \"\\\"t\\\"\", \"__rerun_remap_job_id__\": null, \"in_tab_2\": \"null\", \"__page__\": 0}", 
            "tool_version": "1.0.0", 
            "type": "tool", 
            "user_outputs": []
        }
    }
}