Mercurial > repos > jeremyjliu > region_motif_enrichment
view Galaxy-Workflow-Region_Motif_Count_Comparison_Test_Motifs.ga @ 30:da0bc6dead0d draft
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author | jeremyjliu |
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date | Mon, 05 Jan 2015 22:28:37 -0500 |
parents | c78ebf00379d |
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{ "a_galaxy_workflow": "true", "annotation": "{\n \"refinery_type\": \"analysis\",\n \"refinery_relationships\": [\n {\n \"category\": \"1-1\",\n \"set1\": \"Region 1\",\n \"set2\": \"Region 2\"\n }\n ]\n}", "format-version": "0.1", "name": "Region Motif Count Comparison Combined Motifs", "steps": { "0": { "annotation": "", "id": 0, "input_connections": {}, "inputs": [ { "description": "", "name": "Region 1" } ], "name": "Input dataset", "outputs": [], "position": { "left": 206.95139360427856, "top": 225.94445848464966 }, "tool_errors": null, "tool_id": null, "tool_state": "{\"name\": \"Region 1\"}", "tool_version": null, "type": "data_input", "user_outputs": [] }, "1": { "annotation": "", "id": 1, "input_connections": {}, "inputs": [ { "description": "", "name": "Region 2" } ], "name": "Input dataset", "outputs": [], "position": { "left": 205.94445085525513, "top": 359.95488023757935 }, "tool_errors": null, "tool_id": null, "tool_state": "{\"name\": \"Region 2\"}", "tool_version": null, "type": "data_input", "user_outputs": [] }, "2": { "annotation": "{\n \"out_tab\": {\n \"name\": \"motifs_count_region_1\",\n \"description\": \"Motif counts in region 1.\",\n \"type\": \"tabular\"\n }\n}", "id": 2, "input_connections": { "in_bed": { "id": 0, "output_name": "output" } }, "inputs": [], "name": "Region Motif Intersect", "outputs": [ { "name": "out_tab", "type": "tabular" } ], "position": { "left": 403.94792222976685, "top": 206.9514012336731 }, "post_job_actions": {}, "tool_errors": null, "tool_id": "region_motif_intersect", "tool_state": "{\"__page__\": 0, \"db_type\": \"\\\"t\\\"\", \"in_bed\": \"null\", \"__rerun_remap_job_id__\": null}", "tool_version": "1.0.0", "type": "tool", "user_outputs": [] }, "3": { "annotation": "{\n \"out_tab\": {\n \"name\": \"motifs_count_region_2\",\n \"description\": \"Motif counts in region 2.\",\n \"type\": \"tabular\"\n }\n}", "id": 3, "input_connections": { "in_bed": { "id": 1, "output_name": "output" } }, "inputs": [], "name": "Region Motif Intersect", "outputs": [ { "name": "out_tab", "type": "tabular" } ], "position": { "left": 423.94792222976685, "top": 351.9514012336731 }, "post_job_actions": {}, "tool_errors": null, "tool_id": "region_motif_intersect", "tool_state": "{\"__page__\": 0, \"db_type\": \"\\\"t\\\"\", \"in_bed\": \"null\", \"__rerun_remap_job_id__\": null}", "tool_version": "1.0.0", "type": "tool", "user_outputs": [] }, "4": { "annotation": "{\n \"out_enriched\": {\n \"name\": \"motifs_enriched\",\n \"description\": \"Motifs enriched in regions 1 versus regions 2.\",\n \"type\": \"tabular\"\n },\n \"out_depleted\": {\n \"name\": \"motifs_depleted\",\n \"description\": \"Motifs depleted in regions 1 versus regions 2.\",\n \"type\": \"tabular\"\n },\n \"out_plots\": {\n \"name\": \"motif_counts_plots\",\n \"description\": \"Summary plots for motifs in regions 1 versus regions 2.\",\n \"type\": \"png\"\n }\n}", "id": 4, "input_connections": { "in_tab_1": { "id": 2, "output_name": "out_tab" }, "in_tab_2": { "id": 3, "output_name": "out_tab" } }, "inputs": [], "name": "Region Motif Count Compare", "outputs": [ { "name": "out_enriched", "type": "tabular" }, { "name": "out_depleted", "type": "tabular" }, { "name": "out_plots", "type": "png" } ], "position": { "left": 644.4549102783203, "top": 257.9444580078125 }, "post_job_actions": {}, "tool_errors": null, "tool_id": "region_motif_compare", "tool_state": "{\"in_tab_1\": \"null\", \"db_type\": \"\\\"t\\\"\", \"__rerun_remap_job_id__\": null, \"in_tab_2\": \"null\", \"__page__\": 0}", "tool_version": "1.0.0", "type": "tool", "user_outputs": [] } } }