Mercurial > repos > jeremie > package_pindel_0_2_5

changeset 2:2e7e0d92cb40 draft

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Uploaded
author jeremie
date Wed, 02 Jul 2014 05:50:46 -0400
parents 7a1b7941a04f
children e201ecde3bcb
files tool_dependencies.xml
diffstat 1 files changed, 14 insertions(+), 1 deletions(-) [+]
line wrap: on
line diff
--- a/tool_dependencies.xml	Wed Jul 02 05:25:24 2014 -0400
+++ b/tool_dependencies.xml	Wed Jul 02 05:50:46 2014 -0400
@@ -19,7 +19,20 @@
 					$INSTALL_DIR
 					$BAM_ROOT"
 				</action> -->
-				<action type="shell_command">./INSTALL $BAM_ROOT/include/bam</action>
+				<action type="move_file">
+                    <source>$BAM_ROOT/bin</source>
+                    <destination>./samtools</destination>
+                </action>
+                <action type="move_file">
+                    <source>$BAM_ROOT/lib</source>
+                    <destination>./samtools</destination>
+                </action>
+                <action type="move_directory_files">
+                    <source_directory>$BAM_ROOT/include/bam</source_directory>
+                    <destination_directory>./samtools</destination_directory>
+                </action> 
+
+				<action type="shell_command">./INSTALL ./samtools</action>
 				<action type="move_file">
                     <source>pindel</source>
                     <destination>$INSTALL_DIR/bin</destination>