# HG changeset patch
# User jeremie
# Date 1404294646 14400
# Node ID 2e7e0d92cb40ea266de50e2bf6de0a43977f6321
# Parent  7a1b7941a04fd7ad4a3eba5247d8c226603d2ca8
Uploaded

diff -r 7a1b7941a04f -r 2e7e0d92cb40 tool_dependencies.xml
--- a/tool_dependencies.xml	Wed Jul 02 05:25:24 2014 -0400
+++ b/tool_dependencies.xml	Wed Jul 02 05:50:46 2014 -0400
@@ -19,7 +19,20 @@
 					$INSTALL_DIR
 					$BAM_ROOT"
 				</action> -->
-				<action type="shell_command">./INSTALL $BAM_ROOT/include/bam</action>
+				<action type="move_file">
+                    <source>$BAM_ROOT/bin</source>
+                    <destination>./samtools</destination>
+                </action>
+                <action type="move_file">
+                    <source>$BAM_ROOT/lib</source>
+                    <destination>./samtools</destination>
+                </action>
+                <action type="move_directory_files">
+                    <source_directory>$BAM_ROOT/include/bam</source_directory>
+                    <destination_directory>./samtools</destination_directory>
+                </action> 
+
+				<action type="shell_command">./INSTALL ./samtools</action>
 				<action type="move_file">
                     <source>pindel</source>
                     <destination>$INSTALL_DIR/bin</destination>