Mercurial > repos > jeremie > package_breakdancer_1_2_6
changeset 23:c1552047c0cb draft
Uploaded
author | jeremie |
---|---|
date | Thu, 26 Jun 2014 10:57:05 -0400 |
parents | 2ea8ed21eadd |
children | 7b996c27bdae |
files | tool_dependencies.xml |
diffstat | 1 files changed, 6 insertions(+), 12 deletions(-) [+] |
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--- a/tool_dependencies.xml Thu Jun 26 10:52:22 2014 -0400 +++ b/tool_dependencies.xml Thu Jun 26 10:57:05 2014 -0400 @@ -3,18 +3,12 @@ <package name="breakdancer-max" version="1.2.6"> <install version="1.0"> <actions> -<!-- <action type="shell_command">wget https://www.dropbox.com/s/uu6i5m6ri32ogo9/breakdancer-max</action> --> - - <action type="shell_command">env</action> - <action type="shell_command">echo env</action> - <action type="shell_command">ls</action> - <action type="shell_command">pwd</action> - <action type="shell_command">echo $INSTALL_DIR</action> - <action type="shell_command">echo $tool_shed_repository_install_dir</action> - <action type="shell_command">$REPOSITORY_INSTALL_DIR</action> - <!-- <action type="shell_command">unzip 1_2_6.zip</action> - <action type="shell_command">ls</action> - <action type="shell_command">pwd</action> --> + <action type="download_binary" target_directory="bin"> + <url_template os="linux">https://www.dropbox.com/s/uu6i5m6ri32ogo9/breakdancer-max</url_template> + </action> + <action type="chmod"> + <file mode="750">$INSTALL_DIR/bin/breakdancer-max</file> + </action> <action type="shell_command">cp $REPOSITORY_INSTALL_DIR/breakdancer-max $INSTALL_DIR/bin</action> <action type="shell_command">cp $REPOSITORY_INSTALL_DIR/bam2cfg.pl $INSTALL_DIR/bin</action> <action type="shell_command">cp $REPOSITORY_INSTALL_DIR/breakdancer2vcf.py $INSTALL_DIR/bin</action>