changeset 24:7b996c27bdae draft

Uploaded
author jeremie
date Thu, 26 Jun 2014 11:02:32 -0400
parents c1552047c0cb
children e1776181533b
files tool_dependencies.xml
diffstat 1 files changed, 8 insertions(+), 2 deletions(-) [+]
line wrap: on
line diff
--- a/tool_dependencies.xml	Thu Jun 26 10:57:05 2014 -0400
+++ b/tool_dependencies.xml	Thu Jun 26 11:02:32 2014 -0400
@@ -9,9 +9,15 @@
                 <action type="chmod">
                     <file mode="750">$INSTALL_DIR/bin/breakdancer-max</file>
                 </action>
-				<action type="shell_command">cp $REPOSITORY_INSTALL_DIR/breakdancer-max $INSTALL_DIR/bin</action>
+                <action type="download_binary" target_directory="bin">
+                    <url_template os="linux">https://www.dropbox.com/s/owg7s479fyq8zps/bam2cfg.pl</url_template>
+                </action>
+                <action type="download_binary" target_directory="bin">
+                    <url_template os="linux">https://www.dropbox.com/s/4yj96h4srk0uaf7/breakdancer2vcf.py</url_template>
+                </action>
+				<!-- <action type="shell_command">cp $REPOSITORY_INSTALL_DIR/breakdancer-max $INSTALL_DIR/bin</action>
 				<action type="shell_command">cp $REPOSITORY_INSTALL_DIR/bam2cfg.pl $INSTALL_DIR/bin</action>
-				<action type="shell_command">cp $REPOSITORY_INSTALL_DIR/breakdancer2vcf.py $INSTALL_DIR/bin</action>
+				<action type="shell_command">cp $REPOSITORY_INSTALL_DIR/breakdancer2vcf.py $INSTALL_DIR/bin</action> -->
 				<action type="set_environment">
 					<environment_variable name="PATH" action="prepend_to">$INSTALL_DIR/bin</environment_variable>
 				</action>