Mercurial > repos > jeremie > breakdancer_test
changeset 7:958e643e7c44 draft
Uploaded
| author | jeremie |
|---|---|
| date | Fri, 27 Jun 2014 04:38:07 -0400 |
| parents | d36991c26cdd |
| children | b856f7443a5d |
| files | tool_dependencies.xml |
| diffstat | 1 files changed, 3 insertions(+), 39 deletions(-) [+] |
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--- a/tool_dependencies.xml Fri Jun 27 04:36:57 2014 -0400 +++ b/tool_dependencies.xml Fri Jun 27 04:38:07 2014 -0400 @@ -1,43 +1,7 @@ <?xml version="1.0"?> <tool_dependency> - <package name="breakdancer-max" version="1.2.6"> - <install version="1.0"> - <actions> - <action type="download_binary" target_directory="bin"> - <url_template os="linux">https://www.dropbox.com/s/uu6i5m6ri32ogo9/breakdancer-max?dl=1</url_template> - </action> - - <action type="download_binary" target_directory="bin"> - <url_template os="linux">https://www.dropbox.com/s/owg7s479fyq8zps/bam2cfg.pl?dl=1</url_template> - </action> - <action type="download_binary" target_directory="bin"> - <url_template os="linux">https://www.dropbox.com/s/4yj96h4srk0uaf7/breakdancer2vcf.py?dl=1</url_template> - </action> - <action type="move_file"> - <source>$INSTALL_DIR/bin/breakdancer-max?dl=1</source> - <destination>$INSTALL_DIR/bin/breakdancer-max</destination> - </action> - <action type="move_file"> - <source>$INSTALL_DIR/bin/bam2cfg.pl?dl=1</source> - <destination>$INSTALL_DIR/bin/bam2cfg.pl</destination> - </action> - <action type="move_file"> - <source>$INSTALL_DIR/bin/breakdancer2vcf.py?dl=1</source> - <destination>$INSTALL_DIR/bin/breakdancer2vcf.py</destination> - </action> - <action type="chmod"> - <file mode="750">$INSTALL_DIR/bin/*</file> - </action> - <!-- <action type="shell_command">cp $REPOSITORY_INSTALL_DIR/breakdancer-max $INSTALL_DIR/bin</action> - <action type="shell_command">cp $REPOSITORY_INSTALL_DIR/bam2cfg.pl $INSTALL_DIR/bin</action> - <action type="shell_command">cp $REPOSITORY_INSTALL_DIR/breakdancer2vcf.py $INSTALL_DIR/bin</action> --> - <action type="set_environment"> - <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR/bin</environment_variable> - </action> - </actions> - </install> - <readme> - </readme> - </package> + <package name="breakdancer" version="1.2.6"> + <repository changeset_revision="1c734cc46f3a" name="package_breakdancer_1_2_6" owner="jeremie" toolshed="http://testtoolshed.g2.bx.psu.edu" /> + </package> </tool_dependency>