# HG changeset patch
# User jeremie
# Date 1403858287 14400
# Node ID 958e643e7c4484c68c5531810cf0ed707fc01209
# Parent  d36991c26cdd3b11acba11ddd5e6d3280573edad
Uploaded

diff -r d36991c26cdd -r 958e643e7c44 tool_dependencies.xml
--- a/tool_dependencies.xml	Fri Jun 27 04:36:57 2014 -0400
+++ b/tool_dependencies.xml	Fri Jun 27 04:38:07 2014 -0400
@@ -1,43 +1,7 @@
 <?xml version="1.0"?>
 <tool_dependency>
-	<package name="breakdancer-max" version="1.2.6">
-		<install version="1.0">
-			<actions>
-				<action type="download_binary" target_directory="bin">
-					<url_template os="linux">https://www.dropbox.com/s/uu6i5m6ri32ogo9/breakdancer-max?dl=1</url_template>
-				</action>
-
-				<action type="download_binary" target_directory="bin">
-					<url_template os="linux">https://www.dropbox.com/s/owg7s479fyq8zps/bam2cfg.pl?dl=1</url_template>
-				</action>
-				<action type="download_binary" target_directory="bin">
-					<url_template os="linux">https://www.dropbox.com/s/4yj96h4srk0uaf7/breakdancer2vcf.py?dl=1</url_template>
-				</action>
-				<action type="move_file">
-					<source>$INSTALL_DIR/bin/breakdancer-max?dl=1</source>
-					<destination>$INSTALL_DIR/bin/breakdancer-max</destination>
-				</action>
-				<action type="move_file">
-					<source>$INSTALL_DIR/bin/bam2cfg.pl?dl=1</source>
-					<destination>$INSTALL_DIR/bin/bam2cfg.pl</destination>
-				</action>
-				<action type="move_file">
-					<source>$INSTALL_DIR/bin/breakdancer2vcf.py?dl=1</source>
-					<destination>$INSTALL_DIR/bin/breakdancer2vcf.py</destination>
-				</action>
-				<action type="chmod">
-					<file mode="750">$INSTALL_DIR/bin/*</file>
-				</action>
-				<!-- <action type="shell_command">cp $REPOSITORY_INSTALL_DIR/breakdancer-max $INSTALL_DIR/bin</action>
-				<action type="shell_command">cp $REPOSITORY_INSTALL_DIR/bam2cfg.pl $INSTALL_DIR/bin</action>
-				<action type="shell_command">cp $REPOSITORY_INSTALL_DIR/breakdancer2vcf.py $INSTALL_DIR/bin</action> -->
-				<action type="set_environment">
-					<environment_variable name="PATH" action="prepend_to">$INSTALL_DIR/bin</environment_variable>
-				</action>
-			</actions>
-		</install>
-		<readme>
-		</readme>
-	</package>
+	<package name="breakdancer" version="1.2.6">
+        <repository changeset_revision="1c734cc46f3a" name="package_breakdancer_1_2_6" owner="jeremie" toolshed="http://testtoolshed.g2.bx.psu.edu" />
+    </package>
 </tool_dependency>