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1 <tool id="V19.10_inst_scilab" name="Install Scilab-6.1.1" version="0.0.1">
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2 <description> install scilab </description>
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3
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4 <stdio>
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5 <exit_code range="1:" level="fatal" />
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6 </stdio>
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7
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8
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9 <command><![CDATA[
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10 if [ ! -d $__root_dir__/packages/scilab-6.1.1 ]; then wget -P $__root_dir__/packages/ https://www.scilab.org/download/6.1.1/scilab-6.1.1.bin.linux-x86_64.tar.gz && tar -xvf $__root_dir__/packages/scilab-6.1.1.bin.linux-x86_64.tar.gz -C $__root_dir__/packages/ && rm $__root_dir__/packages/scilab-6.1.1.bin.linux-x86_64.tar.gz && $__root_dir__/packages/scilab-6.1.1/bin/scilab-cli -nb -quit -f $* < ${script_file}; else $__root_dir__/packages/scilab-6.1.1/bin/scilab-cli -nb -quit -f $* < ${script_file}; fi
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11 ]]>
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12 </command>
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13
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14
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15 <configfiles>
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16 <configfile name="script_file">
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17 <![CDATA[ if ~isdef('pls') then ...
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18 atomsSystemUpdate(); ...
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19 atomsInstall('FACT'); ...
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20 atomsLoad('FACT'); ...
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21 end; ...
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22 x=glx_tab2div("${Xdata.file_name}"); ...
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23 y=2*x; ...
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24 div2tab(y,"${Result}") ]]>
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25 </configfile>
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26 </configfiles>
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27
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28
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29 <inputs>
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30 <param name="Xdata" type="data" formar="tabular" label="Input matrix of data" />
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31 </inputs>
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32
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33
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34 <outputs>
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35 <data name="Result" format="tabular" label="Res"/>
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36 </outputs>
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37
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38 <tests>
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39 <test>
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40 <param name="Xvalue" value="X2.tabular"/>
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41
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42 <output name="Result" >
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43 <assert_contents>
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44 <has_text text="436"/>
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45 <has_text text="4240"/>
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46 </assert_contents>
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47 </output>
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48
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49 </test>
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50 </tests>
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51
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52
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53
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54
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55
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56 <help><![CDATA[
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57
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58 .. class:: warningmark
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59
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60 **TIP:** If your data is not TAB delimited, use *Convert format data Tools->Convert*
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61
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62 ----------------------------------------------------------------------
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63
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64
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65 ===========================================
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66 INSTALLATION OF SCILAB AND ITS FACT TOOLBOX
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67 ===========================================
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68
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69
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70 -----------
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71 Description
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72 -----------
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73
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74 This functions performs two processes: 1) the download + unzip of Scilab-6.1.1 in the folder: galaxy/packages/scilab-6.1.1, 2) the installation of the FACT toolbox in Scilab.
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75
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76 Once Scilab+Fact have been correctly installed, this function can be removed from the Galaxy menu.
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77
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78
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79 -----------
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80 Input files
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81 -----------
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82
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83
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84 **Xvalue**
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85
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86 An integer
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87
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88
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89 ------------
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90 Output files
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91 ------------
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92
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93 **Result**
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94
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95 The input value multiplied by 2
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96
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97
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98 ]]>
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99 </help>
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100
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101
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102 <citations>
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103
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104 </citations>
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105
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106 </tool>
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