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1 <tool id="2021_05_eics_merged" name="EICs-synchronized -> EICs-merged" version="0.0.1">
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2
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3 <description> </description>
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4
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5
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6 <requirements>
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7 <requirement type="package" >scilab</requirement>
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8 </requirements>
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9
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10
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11 <stdio>
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12 <exit_code range="1:" level="fatal" />
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13 </stdio>
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14
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15
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16 <command>
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17 <![CDATA[
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18 if [ -d $__root_dir__/packages/scilab-6.1.0 ]; then $__root_dir__/packages/scilab-6.1.0/bin/scilab-cli -nb -quit -f $* < ${script_file}; else scilab-cli -nb -quit -f $* < ${script_file}; fi
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19 ]]>
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20 </command>
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21
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22
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23 <configfiles>
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24 <configfile name="script_file">
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25 <![CDATA[ exec("$__tool_directory__/src/mz_8_merge_list_x_tr_mz4.sci",-1); ...
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26 lasterror(); ...
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27 load("${list_eic4_files}"); ... // la variable s'appelle: list_eic4_files
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28 [x_tr_mz4,ppm_coupe]=mz_8_merge_list_x_tr_mz4(list_eic4_files); ...
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29 ...
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30 ... // save("${merged_x_tr_mz4file}",'x_tr_mz4'); ...
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31 div2tab(x_tr_mz4,"${merged_x_tr_mz4file}"); ...
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32 ...
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33 if ~isempty(lasterror(%f)) then ...
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34 write(0,lasterror()); ...
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35 end; ]]>
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36 </configfile>
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37 </configfiles>
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38
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39
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40 <inputs>
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41 <param name="list_eic4_files" format="mat" type="data" label="Select X data" help="a list of EIC-synchronized files with all the same mz values "/>
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42 </inputs>
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43
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44
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45 <outputs>
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46 <data name="merged_x_tr_mz4file" format="tabular" label="EICs-merged"/>
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47 </outputs>
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48
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49
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50 <tests>
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51
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52 <test>
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53 <param name="list_eic4_files" value="EICs-synchronized.mat"/>
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54 <output name="merged_x_tr_mz4file" file="EICs-merged.tab" compare="sim_size" delta="1000" />
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55 </test>
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56
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57 </tests>
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58
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59 <help>
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60
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61
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62 .. class:: infomark
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63
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64 **Authors** Jean-Claude Boulet (INRAE)
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65
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66
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67 ---------------------------------------------------
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68
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69 =======================================
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70 MOYENNE PLUSIEURS FICHIERS DANS UN SEUL
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71 =======================================
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72
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73 -----------
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74 Description
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75 -----------
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76
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77 Les donnees d'entree sont des fichiers d'EIC (TRi x m/z), ayant des TR differents mais les mêmes m/z.
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78 Cette fonction moyenne les fichiers d'entree dans un seul fichier (TR x m/z).
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79
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80
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81
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82 -----------
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83 Input files
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84 -----------
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85
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86 Au moins deux fichiers d'EICs individuelles
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87
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88 ------------
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89 Output files
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90 ------------
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91
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92 **Un fichier (TR x m/z)**
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93 obtenu en moyennant les fichiers donnés en entrée
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94
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95 </help>
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96
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97
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98 <citations>
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99
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100 </citations>
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101
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102 </tool>
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