Mercurial > repos > jcb-mpl > eics_merged
diff 2018_07_mz_merged.xml @ 0:9d99f060a07f draft
Uploaded
author | jcb-mpl |
---|---|
date | Tue, 27 Apr 2021 14:34:41 +0000 |
parents | |
children | 5d0e02a75d04 |
line wrap: on
line diff
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/2018_07_mz_merged.xml Tue Apr 27 14:34:41 2021 +0000 @@ -0,0 +1,102 @@ +<tool id="2021_05_eics_merged" name="EICs-synchronized -> EICs-merged" version="0.0.1"> + + <description> </description> + + + <requirements> + <requirement type="package" >scilab</requirement> + </requirements> + + + <stdio> + <exit_code range="1:" level="fatal" /> + </stdio> + + + <command> + <![CDATA[ + if [ -d $__root_dir__/packages/scilab-6.1.0 ]; then $__root_dir__/packages/scilab-6.1.0/bin/scilab-cli -nb -quit -f $* < ${script_file}; else scilab-cli -nb -quit -f $* < ${script_file}; fi + ]]> + </command> + + + <configfiles> + <configfile name="script_file"> + <![CDATA[ exec("$__tool_directory__/src/mz_8_merge_list_x_tr_mz4.sci",-1); ... + lasterror(); ... + load("${list_eic4_files}"); ... // la variable s'appelle: list_eic4_files + [x_tr_mz4,ppm_coupe]=mz_8_merge_list_x_tr_mz4(list_eic4_files); ... + ... + ... // save("${merged_x_tr_mz4file}",'x_tr_mz4'); ... + div2tab(x_tr_mz4,"${merged_x_tr_mz4file}"); ... + ... + if ~isempty(lasterror(%f)) then ... + write(0,lasterror()); ... + end; ]]> + </configfile> + </configfiles> + + + <inputs> + <param name="list_eic4_files" format="mat" type="data" label="Select X data" help="a list of EIC-synchronized files with all the same mz values "/> + </inputs> + + + <outputs> + <data name="merged_x_tr_mz4file" format="tabular" label="EICs-merged"/> + </outputs> + + + <tests> + + <test> + <param name="list_eic4_files" value="EICs-synchronized.mat"/> + <output name="merged_x_tr_mz4file" file="EICs-merged.tab" compare="sim_size" delta="1000" /> + </test> + + </tests> + +<help> + + +.. class:: infomark + +**Authors** Jean-Claude Boulet (INRAE) + + +--------------------------------------------------- + +======================================= +MOYENNE PLUSIEURS FICHIERS DANS UN SEUL +======================================= + +----------- +Description +----------- + +Les donnees d'entree sont des fichiers d'EIC (TRi x m/z), ayant des TR differents mais les mêmes m/z. +Cette fonction moyenne les fichiers d'entree dans un seul fichier (TR x m/z). + + + +----------- +Input files +----------- + +Au moins deux fichiers d'EICs individuelles + +------------ +Output files +------------ + +**Un fichier (TR x m/z)** +obtenu en moyennant les fichiers donnés en entrée + +</help> + + +<citations> + +</citations> + +</tool>