Mercurial > repos > iuc > seqtk
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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/seqtk commit 3c29d3c8710ca23b4c59c2cf8501697331a65ac0
author | iuc |
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date | Thu, 15 Oct 2015 13:05:45 -0400 |
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f9305f8811b8
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/seqtk commit 3c29d3c8710ca23b4c59c2cf8501697331a65ac0
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1 <!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN" "http://www.w3.org/TR/xhtml1/DTD/xhtml1-transitional.dtd"> |
f9305f8811b8
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/seqtk commit 3c29d3c8710ca23b4c59c2cf8501697331a65ac0
iuc
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2 <html xmlns="http://www.w3.org/1999/xhtml"> |
f9305f8811b8
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/seqtk commit 3c29d3c8710ca23b4c59c2cf8501697331a65ac0
iuc
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3 <head> |
f9305f8811b8
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/seqtk commit 3c29d3c8710ca23b4c59c2cf8501697331a65ac0
iuc
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4 <meta http-equiv="Content-Type" content="text/html; charset=utf-8" /> |
f9305f8811b8
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/seqtk commit 3c29d3c8710ca23b4c59c2cf8501697331a65ac0
iuc
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5 <meta http-equiv="Content-Style-Type" content="text/css" /> |
f9305f8811b8
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/seqtk commit 3c29d3c8710ca23b4c59c2cf8501697331a65ac0
iuc
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6 <meta name="generator" content="pandoc" /> |
f9305f8811b8
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/seqtk commit 3c29d3c8710ca23b4c59c2cf8501697331a65ac0
iuc
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7 <title></title> |
f9305f8811b8
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/seqtk commit 3c29d3c8710ca23b4c59c2cf8501697331a65ac0
iuc
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8 <style type="text/css">code{white-space: pre;}</style> |
f9305f8811b8
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/seqtk commit 3c29d3c8710ca23b4c59c2cf8501697331a65ac0
iuc
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9 </head> |
f9305f8811b8
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/seqtk commit 3c29d3c8710ca23b4c59c2cf8501697331a65ac0
iuc
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10 <body> |
f9305f8811b8
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/seqtk commit 3c29d3c8710ca23b4c59c2cf8501697331a65ac0
iuc
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11 <h1 id="tool-test-results-powered-by-planemo">Tool Test Results (powered by Planemo)</h1> |
f9305f8811b8
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/seqtk commit 3c29d3c8710ca23b4c59c2cf8501697331a65ac0
iuc
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12 <h2 id="executive-summary">Executive Summary</h2> |
f9305f8811b8
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/seqtk commit 3c29d3c8710ca23b4c59c2cf8501697331a65ac0
iuc
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13 <table> |
f9305f8811b8
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/seqtk commit 3c29d3c8710ca23b4c59c2cf8501697331a65ac0
iuc
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14 <thead> |
f9305f8811b8
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/seqtk commit 3c29d3c8710ca23b4c59c2cf8501697331a65ac0
iuc
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15 <tr class="header"> |
f9305f8811b8
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/seqtk commit 3c29d3c8710ca23b4c59c2cf8501697331a65ac0
iuc
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16 <th align="left">Test State</th> |
f9305f8811b8
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/seqtk commit 3c29d3c8710ca23b4c59c2cf8501697331a65ac0
iuc
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17 <th align="left">Count</th> |
f9305f8811b8
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/seqtk commit 3c29d3c8710ca23b4c59c2cf8501697331a65ac0
iuc
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18 </tr> |
f9305f8811b8
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/seqtk commit 3c29d3c8710ca23b4c59c2cf8501697331a65ac0
iuc
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19 </thead> |
f9305f8811b8
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/seqtk commit 3c29d3c8710ca23b4c59c2cf8501697331a65ac0
iuc
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20 <tbody> |
f9305f8811b8
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/seqtk commit 3c29d3c8710ca23b4c59c2cf8501697331a65ac0
iuc
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21 <tr class="odd"> |
f9305f8811b8
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/seqtk commit 3c29d3c8710ca23b4c59c2cf8501697331a65ac0
iuc
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22 <td align="left">Total</td> |
f9305f8811b8
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/seqtk commit 3c29d3c8710ca23b4c59c2cf8501697331a65ac0
iuc
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23 <td align="left">2</td> |
f9305f8811b8
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/seqtk commit 3c29d3c8710ca23b4c59c2cf8501697331a65ac0
iuc
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24 </tr> |
f9305f8811b8
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/seqtk commit 3c29d3c8710ca23b4c59c2cf8501697331a65ac0
iuc
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25 <tr class="even"> |
f9305f8811b8
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/seqtk commit 3c29d3c8710ca23b4c59c2cf8501697331a65ac0
iuc
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26 <td align="left">Passed</td> |
f9305f8811b8
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/seqtk commit 3c29d3c8710ca23b4c59c2cf8501697331a65ac0
iuc
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27 <td align="left">1</td> |
f9305f8811b8
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/seqtk commit 3c29d3c8710ca23b4c59c2cf8501697331a65ac0
iuc
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28 </tr> |
f9305f8811b8
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/seqtk commit 3c29d3c8710ca23b4c59c2cf8501697331a65ac0
iuc
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29 <tr class="odd"> |
f9305f8811b8
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/seqtk commit 3c29d3c8710ca23b4c59c2cf8501697331a65ac0
iuc
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30 <td align="left">Error</td> |
f9305f8811b8
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/seqtk commit 3c29d3c8710ca23b4c59c2cf8501697331a65ac0
iuc
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31 <td align="left">0</td> |
f9305f8811b8
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/seqtk commit 3c29d3c8710ca23b4c59c2cf8501697331a65ac0
iuc
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32 </tr> |
f9305f8811b8
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/seqtk commit 3c29d3c8710ca23b4c59c2cf8501697331a65ac0
iuc
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33 <tr class="even"> |
f9305f8811b8
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/seqtk commit 3c29d3c8710ca23b4c59c2cf8501697331a65ac0
iuc
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34 <td align="left">Failure</td> |
f9305f8811b8
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/seqtk commit 3c29d3c8710ca23b4c59c2cf8501697331a65ac0
iuc
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35 <td align="left">0</td> |
f9305f8811b8
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/seqtk commit 3c29d3c8710ca23b4c59c2cf8501697331a65ac0
iuc
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36 </tr> |
f9305f8811b8
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/seqtk commit 3c29d3c8710ca23b4c59c2cf8501697331a65ac0
iuc
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37 <tr class="odd"> |
f9305f8811b8
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/seqtk commit 3c29d3c8710ca23b4c59c2cf8501697331a65ac0
iuc
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38 <td align="left">Skipped</td> |
f9305f8811b8
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/seqtk commit 3c29d3c8710ca23b4c59c2cf8501697331a65ac0
iuc
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39 <td align="left">0</td> |
f9305f8811b8
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/seqtk commit 3c29d3c8710ca23b4c59c2cf8501697331a65ac0
iuc
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40 </tr> |
f9305f8811b8
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/seqtk commit 3c29d3c8710ca23b4c59c2cf8501697331a65ac0
iuc
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41 </tbody> |
f9305f8811b8
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/seqtk commit 3c29d3c8710ca23b4c59c2cf8501697331a65ac0
iuc
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42 </table> |
f9305f8811b8
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/seqtk commit 3c29d3c8710ca23b4c59c2cf8501697331a65ac0
iuc
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43 <h2 id="detailed-results">Detailed Results</h2> |
f9305f8811b8
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/seqtk commit 3c29d3c8710ca23b4c59c2cf8501697331a65ac0
iuc
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44 <h3 id="functional.test_toolbox.testfortool_seqtk_comp.test_tool_000000">functional.test_toolbox.TestForTool_seqtk_comp.test_tool_000000</h3> |
f9305f8811b8
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/seqtk commit 3c29d3c8710ca23b4c59c2cf8501697331a65ac0
iuc
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45 <p>Job Passed</p> |
f9305f8811b8
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/seqtk commit 3c29d3c8710ca23b4c59c2cf8501697331a65ac0
iuc
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46 <h3 id="functional.test_toolbox.testfortool_seqtk_comp.test_tool_000001">functional.test_toolbox.TestForTool_seqtk_comp.test_tool_000001</h3> |
f9305f8811b8
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/seqtk commit 3c29d3c8710ca23b4c59c2cf8501697331a65ac0
iuc
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47 <p>Job Error! (State: failure)</p> |
f9305f8811b8
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/seqtk commit 3c29d3c8710ca23b4c59c2cf8501697331a65ac0
iuc
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48 <p>Command Line:</p> |
f9305f8811b8
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/seqtk commit 3c29d3c8710ca23b4c59c2cf8501697331a65ac0
iuc
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49 <pre class="console"><code>seqtk comp /tmp/tmpiQOEjP/files/000/dataset_3.dat | awk 'BEGIN{print "#chr\tlength\t#A\t#C\t#G\t#T\t#2\t#3\t#4\t#CpG\t#tv\t#ts\t#CpG-ts"}1' > /tmp/tmpiQOEjP/files/000/dataset_4.dat</code></pre> |
f9305f8811b8
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/seqtk commit 3c29d3c8710ca23b4c59c2cf8501697331a65ac0
iuc
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50 <p>exited with code 0.</p> |
f9305f8811b8
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/seqtk commit 3c29d3c8710ca23b4c59c2cf8501697331a65ac0
iuc
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51 <h4 id="test-output">Test Output</h4> |
f9305f8811b8
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/seqtk commit 3c29d3c8710ca23b4c59c2cf8501697331a65ac0
iuc
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52 <pre class="console"><code>[u'History item different than expected, difference (using diff):\n( /home/hxr/work/tools-iuc/tools/seqtk/test-data/seqtk_cutn.out v. /tmp/tmpiQOEjP/tmp/tmpFeDB5Tseqtk_cutn.out )\n--- local_file\n+++ history_data\n@@ -1,4 +1,2 @@\n->test:1-17\n-AACTGATCGATCGATCG\n->test:29-33\n-ACATG\n+#chr\tlength\t#A\t#C\t#G\t#T\t#2\t#3\t#4\t#CpG\t#tv\t#ts\t#CpG-ts\n+test\t33\t7\t5\t5\t5\t0\t0\t11\t6\t0\t0\t0\n']</code></pre> |
f9305f8811b8
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/seqtk commit 3c29d3c8710ca23b4c59c2cf8501697331a65ac0
iuc
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53 </body> |
f9305f8811b8
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/seqtk commit 3c29d3c8710ca23b4c59c2cf8501697331a65ac0
iuc
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54 </html> |