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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/seqtk commit 3c29d3c8710ca23b4c59c2cf8501697331a65ac0
author iuc
date Thu, 15 Oct 2015 13:05:45 -0400
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<!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN" "http://www.w3.org/TR/xhtml1/DTD/xhtml1-transitional.dtd">
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  <style type="text/css">code{white-space: pre;}</style>
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<h1 id="tool-test-results-powered-by-planemo">Tool Test Results (powered by Planemo)</h1>
<h2 id="executive-summary">Executive Summary</h2>
<table>
<thead>
<tr class="header">
<th align="left">Test State</th>
<th align="left">Count</th>
</tr>
</thead>
<tbody>
<tr class="odd">
<td align="left">Total</td>
<td align="left">2</td>
</tr>
<tr class="even">
<td align="left">Passed</td>
<td align="left">1</td>
</tr>
<tr class="odd">
<td align="left">Error</td>
<td align="left">0</td>
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<tr class="even">
<td align="left">Failure</td>
<td align="left">0</td>
</tr>
<tr class="odd">
<td align="left">Skipped</td>
<td align="left">0</td>
</tr>
</tbody>
</table>
<h2 id="detailed-results">Detailed Results</h2>
<h3 id="functional.test_toolbox.testfortool_seqtk_comp.test_tool_000000">functional.test_toolbox.TestForTool_seqtk_comp.test_tool_000000</h3>
<p>Job Passed</p>
<h3 id="functional.test_toolbox.testfortool_seqtk_comp.test_tool_000001">functional.test_toolbox.TestForTool_seqtk_comp.test_tool_000001</h3>
<p>Job Error! (State: failure)</p>
<p>Command Line:</p>
<pre class="console"><code>seqtk comp  /tmp/tmpiQOEjP/files/000/dataset_3.dat | awk &#39;BEGIN{print &quot;#chr\tlength\t#A\t#C\t#G\t#T\t#2\t#3\t#4\t#CpG\t#tv\t#ts\t#CpG-ts&quot;}1&#39;  &gt; /tmp/tmpiQOEjP/files/000/dataset_4.dat</code></pre>
<p>exited with code 0.</p>
<h4 id="test-output">Test Output</h4>
<pre class="console"><code>[u&#39;History item  different than expected, difference (using diff):\n( /home/hxr/work/tools-iuc/tools/seqtk/test-data/seqtk_cutn.out v. /tmp/tmpiQOEjP/tmp/tmpFeDB5Tseqtk_cutn.out )\n--- local_file\n+++ history_data\n@@ -1,4 +1,2 @@\n-&gt;test:1-17\n-AACTGATCGATCGATCG\n-&gt;test:29-33\n-ACATG\n+#chr\tlength\t#A\t#C\t#G\t#T\t#2\t#3\t#4\t#CpG\t#tv\t#ts\t#CpG-ts\n+test\t33\t7\t5\t5\t5\t0\t0\t11\t6\t0\t0\t0\n&#39;]</code></pre>
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