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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/seqtk commit 3c29d3c8710ca23b4c59c2cf8501697331a65ac0
author iuc
date Thu, 15 Oct 2015 13:05:45 -0400
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8:d3b46dec1f5e 9:f9305f8811b8
1 <!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN" "http://www.w3.org/TR/xhtml1/DTD/xhtml1-transitional.dtd">
2 <html xmlns="http://www.w3.org/1999/xhtml">
3 <head>
4 <meta http-equiv="Content-Type" content="text/html; charset=utf-8" />
5 <meta http-equiv="Content-Style-Type" content="text/css" />
6 <meta name="generator" content="pandoc" />
7 <title></title>
8 <style type="text/css">code{white-space: pre;}</style>
9 </head>
10 <body>
11 <h1 id="tool-test-results-powered-by-planemo">Tool Test Results (powered by Planemo)</h1>
12 <h2 id="executive-summary">Executive Summary</h2>
13 <table>
14 <thead>
15 <tr class="header">
16 <th align="left">Test State</th>
17 <th align="left">Count</th>
18 </tr>
19 </thead>
20 <tbody>
21 <tr class="odd">
22 <td align="left">Total</td>
23 <td align="left">2</td>
24 </tr>
25 <tr class="even">
26 <td align="left">Passed</td>
27 <td align="left">1</td>
28 </tr>
29 <tr class="odd">
30 <td align="left">Error</td>
31 <td align="left">0</td>
32 </tr>
33 <tr class="even">
34 <td align="left">Failure</td>
35 <td align="left">0</td>
36 </tr>
37 <tr class="odd">
38 <td align="left">Skipped</td>
39 <td align="left">0</td>
40 </tr>
41 </tbody>
42 </table>
43 <h2 id="detailed-results">Detailed Results</h2>
44 <h3 id="functional.test_toolbox.testfortool_seqtk_comp.test_tool_000000">functional.test_toolbox.TestForTool_seqtk_comp.test_tool_000000</h3>
45 <p>Job Passed</p>
46 <h3 id="functional.test_toolbox.testfortool_seqtk_comp.test_tool_000001">functional.test_toolbox.TestForTool_seqtk_comp.test_tool_000001</h3>
47 <p>Job Error! (State: failure)</p>
48 <p>Command Line:</p>
49 <pre class="console"><code>seqtk comp /tmp/tmpiQOEjP/files/000/dataset_3.dat | awk &#39;BEGIN{print &quot;#chr\tlength\t#A\t#C\t#G\t#T\t#2\t#3\t#4\t#CpG\t#tv\t#ts\t#CpG-ts&quot;}1&#39; &gt; /tmp/tmpiQOEjP/files/000/dataset_4.dat</code></pre>
50 <p>exited with code 0.</p>
51 <h4 id="test-output">Test Output</h4>
52 <pre class="console"><code>[u&#39;History item different than expected, difference (using diff):\n( /home/hxr/work/tools-iuc/tools/seqtk/test-data/seqtk_cutn.out v. /tmp/tmpiQOEjP/tmp/tmpFeDB5Tseqtk_cutn.out )\n--- local_file\n+++ history_data\n@@ -1,4 +1,2 @@\n-&gt;test:1-17\n-AACTGATCGATCGATCG\n-&gt;test:29-33\n-ACATG\n+#chr\tlength\t#A\t#C\t#G\t#T\t#2\t#3\t#4\t#CpG\t#tv\t#ts\t#CpG-ts\n+test\t33\t7\t5\t5\t5\t0\t0\t11\t6\t0\t0\t0\n&#39;]</code></pre>
53 </body>
54 </html>